PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR88746.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 824aa    MW: 90296.3 Da    PI: 7.1877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR88746.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-181876357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  RWR88746.1 18 KYVRYTPEQVEALERVYLECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
                6789*****************************************************97 PP
2START172.82.2e-541653722204
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  e++ v+ +g  g+++ +++++
  RWR88746.1 165 IAEETLAEFLSKATGTAVDWVQMLGMKPGPDSIGIVAVSHNCSGVAARACGLVNLEPT-KVAETLKDRPSWYRDCRCLEVVSVLPTGsgGTIEIIYMQT 262
                 68999*****************************************************.6666666666****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l++ Rdf++ Ry+  l++g++vi+++S+++ +  p     +++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s+ + ++
  RWR88746.1 263 YAPTTLASaRDFWTMRYTTGLEDGSLVICERSLTPATGGPAgppAPNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKIVAQ 361
                 ************************************99998889******************************************************* PP

                 HHHHHHTXXXX CS
       START 194 ktwvatlqrqc 204
                 k+++a+l++ +
  RWR88746.1 362 KMTMAALRHIR 372
                 *******9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    
MALTLHKESS VKQMDASKYV RYTPEQVEAL ERVYLECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQKQVSQ LVYENGYMRQ  120
QLQNASVATT DTSCESVVTS GQHQQNPTPQ HPQRDANNPA GLLAIAEETL AEFLSKATGT  180
AVDWVQMLGM KPGPDSIGIV AVSHNCSGVA ARACGLVNLE PTKVAETLKD RPSWYRDCRC  240
LEVVSVLPTG SGGTIEIIYM QTYAPTTLAS ARDFWTMRYT TGLEDGSLVI CERSLTPATG  300
GPAGPPAPNF VRAEMLPSGY LIRPCEGGGS IIHIVDHVDL DAWSVPEVLR PLYESSKIVA  360
QKMTMAALRH IRQIAQETSG EIVYGGGRQP AVLRTFSQRL SRGFNDAVNG FADDGWSLMG  420
SDGVEDVTVV INSSPGKLLG SYVNSSTMVS TLGGGVLCAK ASMLLQNVPP ALLVRFLREH  480
RSEWADYGID TYSASSLKAS PYSVPSVRAS GFPSSQVILP LAHTVEHEEL LEVIRLENHG  540
LAQDDAVLSR DMYLLQLCSG IDENAVGACA QLVFAPIDES FADDAPLLPS GFRQEGPAVT  600
RTLDLASALE GPGGARSAGA AASNAYNQRS VLTIAFQFAY ENHLRDNVAA MARQYVRSVV  660
ASVQRVAMAI APSKLNLQMG PKSLPGSPEA VTLARWISRS YRFHTGMELL RLDSQAGDSL  720
LKTLWHHSDA IMCCSMKTNA QPVFTFANQA GLDMLETTLI ALQDILLDKI LDEAGRKTLC  780
SEVLHICQLE SACRAWAGRF LMSRPLHGRS WMKRTQIIAW LLCS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein