PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR88263.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 422aa MW: 46131.2 Da PI: 4.6833

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR88263.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.1	7.7e-08	3	35	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ +++ +C++++ +lC +C +++H RWR88263.1 3 PLCDFCGAQRAMVYCRSDSACLCFSCDVYIHAA 35 68*****************************54 PP
2	zf-B_box	22.9	1.8e-07	45	76	3	34
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 +++C++++++ +++ C ++++ lC++C ++ RWR88263.1 45 APVCDRCGSQAAIIRCLEDKVSLCQNCDWNGC 76 689************************97765 PP
3	CCT	59.4	1.2e-20	366	409	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+k R F K+irY+sRK++A++R+RvKGrFvk+ RWR88263.1 366 RDKAKMRYNEKKKVRTFGKQIRYASRKVRADTRKRVKGRFVKAG 409 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MDPLCDFCGA QRAMVYCRSD SACLCFSCDV YIHAANALSR RHLRAPVCDR CGSQAAIIRC 60 LEDKVSLCQN CDWNGCLGIG PGHQRETMNC YSGCPSLAEL SRFWSCIFCS SSLNEEDVNW 120 PGWKIMPTNE SSVNNRWEQG ENSSVRLNGL DSSTKFGPWI STSSEEPNAN SVVCGGDQQV 180 GLQETNLSKV GCPPFKDLRN YDDDEFCEGF NVDDVGLNFD NSDELFGCPQ SNSIYPYEDV 240 GMDGILMEKN FSIGDSDGPN ENITEASSSG QHGCMTLQSS RAVAAVGMIQ AVAGCSDQVL 300 FNPNGNTNIN LSFPSGQVHP SISLSVSNLT GESNVADYQD CGVSPIFLSG ESPWDSNLEA 360 SGPQARDKAK MRYNEKKKVR TFGKQIRYAS RKVRADTRKR VKGRFVKAGE AYDYDPLVSK 420 SG

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MDPLCDFCGA QRAMVYCRSD SACLCFSCDV YIHAANALSR RHLRAPVCDR CGSQAAIIRC  60
LEDKVSLCQN CDWNGCLGIG PGHQRETMNC YSGCPSLAEL SRFWSCIFCS SSLNEEDVNW  120
PGWKIMPTNE SSVNNRWEQG ENSSVRLNGL DSSTKFGPWI STSSEEPNAN SVVCGGDQQV  180
GLQETNLSKV GCPPFKDLRN YDDDEFCEGF NVDDVGLNFD NSDELFGCPQ SNSIYPYEDV  240
GMDGILMEKN FSIGDSDGPN ENITEASSSG QHGCMTLQSS RAVAAVGMIQ AVAGCSDQVL  300
FNPNGNTNIN LSFPSGQVHP SISLSVSNLT GESNVADYQD CGVSPIFLSG ESPWDSNLEA  360
SGPQARDKAK MRYNEKKKVR TFGKQIRYAS RKVRADTRKR VKGRFVKAGE AYDYDPLVSK  420
SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-89	CO-like family protein