PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87980.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 413aa MW: 46112.2 Da PI: 8.4365

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87980.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H RWR87980.1 78 FVCEICNKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	13.7	0.00018	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ RWR87980.1 154 WKCEKCSKRYAVQSDWKAHSKTC 176 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MLPAAMSNST SLSEEASVSS GNRVQDFNAF HPMLSSIAPQ QELQQKKIKK KRNLPGNPDP 60 DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEIRKKVYV 120 CPDPSCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTKE 180 YKCDCGTLFS RKDSFMTHRA FCDALAEESA RLSSKAIDPI LLQIPQNSHD PSPLLSFQDP 240 SLHFPNQTPP PPTIPTSTHI QYPLSLSWDP HNINNPIQPI IKSEAPFSFL PDHHHPPTSS 300 SSSPPLIYPN VDVAHPTYTP RMLMSASRNG MDEVGPMEGV GHMITQDWMG FGAGDFATWQ 360 KREGMTRDFL GVAGEAAANV GELVSITGVD FSGDDRDRSF KPGFGFSETW GDC

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MLPAAMSNST SLSEEASVSS GNRVQDFNAF HPMLSSIAPQ QELQQKKIKK KRNLPGNPDP  60
DAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT SKEIRKKVYV  120
CPDPSCVHHH PSRALGDLTG IKKHFCRKHG EKKWKCEKCS KRYAVQSDWK AHSKTCGTKE  180
YKCDCGTLFS RKDSFMTHRA FCDALAEESA RLSSKAIDPI LLQIPQNSHD PSPLLSFQDP  240
SLHFPNQTPP PPTIPTSTHI QYPLSLSWDP HNINNPIQPI IKSEAPFSFL PDHHHPPTSS  300
SSSPPLIYPN VDVAHPTYTP RMLMSASRNG MDEVGPMEGV GHMITQDWMG FGAGDFATWQ  360
KREGMTRDFL GVAGEAAANV GELVSITGVD FSGDDRDRSF KPGFGFSETW GDC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	117	KLRQRTSKEIRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-111	C2H2 family protein