PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR87615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 798aa MW: 86909 Da PI: 6.3819 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 108 | 163 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l+L++rqVk+WFqNrR+++k RWR87615.1 108 KKRYHRHTPQQIQELETLFKECPHPDEKQRLELSRRLSLETRQVKFWFQNRRTQMK 163 688999***********************************************999 PP | |||||||
2 | START | 204.8 | 3.4e-64 | 312 | 536 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela++a++elvk+++a+ep+W s e +n++e++++f++ + +ea+r+ g+v+ +++ ve+l+d + +W ++++ +a+t++vis RWR87615.1 312 ELALAAMDELVKMVQAGEPLWIPSLdggkETLNYEEYVRSFPRCIRpkpvgFVTEASRDNGMVIINSMAFVETLMDAN-RWAQMFPciiaRASTTDVIS 409 5899*************************************9977799999***************************.******************** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 sg gal+lm ael +lsplvp R++ f+R+++q+ +g+w++vdvS+d +++p+ s ++ +++lpSg+++++++ng+skvtwveh++++++ +h RWR87615.1 410 SGmcgtrnGALHLMHAELHVLSPLVPiREVNFLRFCKQHADGVWAVVDVSIDGIRENPTASTYINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESAVH 508 *************************************************************************************************** PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 +l+r+l++sg+ +ga++wvatlqr c++ RWR87615.1 509 QLYRRLLSSGMGFGAQRWVATLQRECQC 536 *************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 798 aa Download sequence |
MSFGGFLDNG SSARVVADIP YSSMPAGAIS QPHLVSPTLT NTMFNSPGLS LALQPNMEGR 60 GEMGRIGGEF EASGSGRSKD DEYESRSGSD NMEGGSGDDQ DADNPPRKKR YHRHTPQQIQ 120 ELETLFKECP HPDEKQRLEL SRRLSLETRQ VKFWFQNRRT QMKTQLERHE NSLLRQENDK 180 LRAENLTIRD AMRNPICSNC GGPAMLGEVS LEEQHLRIEN ARLKDELDRV CALAGKFLGR 240 PVTSMTTASI PPQMPISSLE LAVGSNGFGG LSSVATTLPP GADFGAVSPT MSMVPGARPA 300 NVTGMERSMF LELALAAMDE LVKMVQAGEP LWIPSLDGGK ETLNYEEYVR SFPRCIRPKP 360 VGFVTEASRD NGMVIINSMA FVETLMDANR WAQMFPCIIA RASTTDVISS GMCGTRNGAL 420 HLMHAELHVL SPLVPIREVN FLRFCKQHAD GVWAVVDVSI DGIRENPTAS TYINCRRLPS 480 GCVVQDMPNG YSKVTWVEHA EYDESAVHQL YRRLLSSGMG FGAQRWVATL QRECQCLAIL 540 MSSAISGRDH TAITPGGRRS MLKLAQRMTN NFCAGVCAST VHKWNKLCVG NVDEDVRVMT 600 RKSVDDPGEP PGIVLSAATS VWLPVSPSRL FDFLRDERLR SEWDILSNGG PMQEMAHIAK 660 GPDHGNCVSL LRASAMNANQ SSMLILQETC VDAAGALVVY APVDIPAMHV VMNGGDSAYV 720 ALLPSGFAIV PDGPGCGPYN NSTNSGNQKV GGSLLTVAFQ ILVNHLPTAK LTDESVDTVN 780 NLISCTVQKI KGALHCES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |