PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWR87434.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 290aa MW: 32757.9 Da PI: 7.5662 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.9e-18 | 132 | 186 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k RWR87434.1 132 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 186 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125 | 3.3e-40 | 132 | 221 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr +++l+een+rL+kev+eLr +l RWR87434.1 132 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRLCENLTEENRRLQKEVQELR-AL 221 69*************************************************************************************9.55 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 290 aa Download sequence |
MTLEKEDLGL SLSLNSNSFE NRQSLQLNPM SSSSPSSHFL LQKSSWNHVF GSAERSCEIF 60 KGETRPFLKG IDVNRLPSTA DCEEEAGISS PNSTLSSVSG KRSERDPIGD EIEIERDSSR 120 GISDDEDGET SRKKLRLSKD QSAVLEESFK EHNTLNPKQK LALAKQLNLR PRQVEVWFQN 180 RRARTKLKQT EVDCEFLKRL CENLTEENRR LQKEVQELRA LKLSPQLYMH MPPPTTLTLC 240 PSCERVAVSS SDANHRPHHP IPISPWAPPP PPPPHAPFIR ALDPHPTSRS |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 131 | 137 | SRKKLRL |
2 | 181 | 189 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16780.1 | 9e-76 | HD-ZIP family protein |