PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR87418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 211aa MW: 24291.6 Da PI: 8.3693 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.5 | 2.7e-09 | 82 | 101 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+r G C++Gd+C+FaHg RWR87418.1 82 CPEFRR-GGCRRGDSCQFAHG 101 ******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence |
MLKAVNQASK PDTKPPQFSN CPGGDGDGDT IYESDEFRMY SFKIRRCTKT RAHSWTECPY 60 AHRGEKAQRR DPRKFNYSAI TCPEFRRGGC RRGDSCQFAH GVFEFWLHPT RYRTLACMAG 120 KYCRRKVCFF AHTPEQMRIG TMAGLCHCIY RICANSPPVA PENEFGKVAD RNLVKGMRDL 180 KKEGDEEKVE RCFGDEMSDF PDIDWISELV S |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07500.1 | 1e-63 | C3H family protein |