PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR87409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 364aa MW: 39985 Da PI: 6.8858 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 111 | 135 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ G C+y +C+FaHg RWR87409.1 111 FKTKLCCKFRI-GACPYITNCNFAHG 135 69*********.*************8 PP | |||||||
2 | zf-CCCH | 44.6 | 2.4e-14 | 239 | 264 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg RWR87409.1 239 WKTRICNKWEMTGYCPFGSKCHFAHG 264 8************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence |
MEYGGEAGFP GNVGQIMPEM PGLGSENWMP GYNDPAIWAT EDEYGAWNGD PAGDSLSNSN 60 YDGRHSQTRS GSEPPNKKSR NSQGDSQGNG YSRDRDPSSG NRSKAIGKMF FKTKLCCKFR 120 IGACPYITNC NFAHGAEELR KPPPNWQEIV AAQDDDRGPS EPREEHQIPS LSSTGMGGET 180 QRSHNRRHCK KFYTEEGCPF GDMCTFLHDE QSKARESVAI SLGPTAGYGP NGQPKPSNWK 240 TRICNKWEMT GYCPFGSKCH FAHGLGELHK YGGGLVEMEG RDPSTAPPDS KQALASTKTP 300 TNAITISSTS VPHSDVYHMG VNSQRPGGVN QRQGQSPLQK WKGPDKISRI YGDWIDDNEW 360 ESAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-115 | C3H family protein |