PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87409.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 364aa MW: 39985 Da PI: 6.8858

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87409.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.1e-07	111	135	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ G C+y +C+FaHg RWR87409.1 111 FKTKLCCKFRI-GACPYITNCNFAHG 135 69*******.***********8 PP
2	zf-CCCH	44.6	2.4e-14	239	264	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg RWR87409.1 239 WKTRICNKWEMTGYCPFGSKCHFAHG 264 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEYGGEAGFP GNVGQIMPEM PGLGSENWMP GYNDPAIWAT EDEYGAWNGD PAGDSLSNSN 60 YDGRHSQTRS GSEPPNKKSR NSQGDSQGNG YSRDRDPSSG NRSKAIGKMF FKTKLCCKFR 120 IGACPYITNC NFAHGAEELR KPPPNWQEIV AAQDDDRGPS EPREEHQIPS LSSTGMGGET 180 QRSHNRRHCK KFYTEEGCPF GDMCTFLHDE QSKARESVAI SLGPTAGYGP NGQPKPSNWK 240 TRICNKWEMT GYCPFGSKCH FAHGLGELHK YGGGLVEMEG RDPSTAPPDS KQALASTKTP 300 TNAITISSTS VPHSDVYHMG VNSQRPGGVN QRQGQSPLQK WKGPDKISRI YGDWIDDNEW 360 ESAR

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEYGGEAGFP GNVGQIMPEM PGLGSENWMP GYNDPAIWAT EDEYGAWNGD PAGDSLSNSN  60
YDGRHSQTRS GSEPPNKKSR NSQGDSQGNG YSRDRDPSSG NRSKAIGKMF FKTKLCCKFR  120
IGACPYITNC NFAHGAEELR KPPPNWQEIV AAQDDDRGPS EPREEHQIPS LSSTGMGGET  180
QRSHNRRHCK KFYTEEGCPF GDMCTFLHDE QSKARESVAI SLGPTAGYGP NGQPKPSNWK  240
TRICNKWEMT GYCPFGSKCH FAHGLGELHK YGGGLVEMEG RDPSTAPPDS KQALASTKTP  300
TNAITISSTS VPHSDVYHMG VNSQRPGGVN QRQGQSPLQK WKGPDKISRI YGDWIDDNEW  360
ESAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-115	C3H family protein