PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR87394.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LSD | ||||||||
Protein Properties | Length: 188aa MW: 20569.6 Da PI: 7.1728 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 33.6 | 6.3e-11 | 113 | 137 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gC++lL Y GA+sV+Ca+C++V RWR87394.1 113 CSGCQKLLLYAHGATSVCCAVCNAV 137 ************************9 PP | |||||||
2 | zf-LSD1 | 46.3 | 6.8e-15 | 152 | 175 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC+tlL+Y rGA+sV+C++C+t RWR87394.1 152 CGGCHTLLMYIRGATSVQCSSCHT 175 ***********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence |
MRHIDGHYIN IPNLEPDSLL DALKSACHHA CFTDDNLSAG NGRWEFVFPY LRMQGFKVEG 60 RWQPVSDKQC RSPYPIPPVP FTPPSGSSHE DIKLYGIYEI FAHYSGVQSQ LVCSGCQKLL 120 LYAHGATSVC CAVCNAVTNV PSPGTEMAQL VCGGCHTLLM YIRGATSVQC SSCHTFNLAL 180 EGKKISSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 6e-31 | LSD family protein |