PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR87038.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 398aa MW: 43625 Da PI: 8.2284

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR87038.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.5	1.6e-42	90	167	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C v+gC++dls+ k+yhrrhkvCevh+k+p+vlv g+eqrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+ RWR87038.1 90 MCSVDGCKSDLSNSKDYHRRHKVCEVHAKTPKVLVGGQEQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 167 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MDWDFKMPSW ELPDLERGVN PNIGSVVGLS GLEMQRKKGD CSVDLKLGRL GDFPEGSSHK 60 WKNSKPSPML QPQGPSKRPR GPSNGANSAM CSVDGCKSDL SNSKDYHRRH KVCEVHAKTP 120 KVLVGGQEQR FCQQCSRFHS LGEFDEVKRS CRKRLDGHNR RRRKPQPESL SMNSGSLLSN 180 RQGNRFSSIT PQMLSAVSDP NWGGFIKAEE DALFGHHPSA FPEKHVFTVS YSRPYKGGKQ 240 FPFLQANDST LRNPTMPETS SFLPLLTTIA SSESGHKMFA DGMTRALDSE CALSLLSSPA 300 STLGIGVSHM VQQTDRIPMV QPLVEGLHYD SVGRYCSQAS NNVSTTGFSC SGVEDEQLGT 360 VLVSNASDAG FNCHDILHVA GDGSSENGVF KTLPFSWQ

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MDWDFKMPSW ELPDLERGVN PNIGSVVGLS GLEMQRKKGD CSVDLKLGRL GDFPEGSSHK  60
WKNSKPSPML QPQGPSKRPR GPSNGANSAM CSVDGCKSDL SNSKDYHRRH KVCEVHAKTP  120
KVLVGGQEQR FCQQCSRFHS LGEFDEVKRS CRKRLDGHNR RRRKPQPESL SMNSGSLLSN  180
RQGNRFSSIT PQMLSAVSDP NWGGFIKAEE DALFGHHPSA FPEKHVFTVS YSRPYKGGKQ  240
FPFLQANDST LRNPTMPETS SFLPLLTTIA SSESGHKMFA DGMTRALDSE CALSLLSSPA  300
STLGIGVSHM VQQTDRIPMV QPLVEGLHYD SVGRYCSQAS NNVSTTGFSC SGVEDEQLGT  360
VLVSNASDAG FNCHDILHVA GDGSSENGVF KTLPFSWQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	165	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	2e-48	SBP family protein