PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR86935.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family ARF
Protein Properties Length: 861aa    MW: 95519.3 Da    PI: 6.3511
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR86935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.4e-23157258199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +++a+e+         ++  +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el
  RWR86935.1 157 FCKTLTASDTSTHGGFSVLRRHADEClppldmaR-QP-PTQELVAKDLHGIEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGEL 251
                 99*****************************743.33.3459************************************************..449999* PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  RWR86935.1 252 RVGVRRA 258
                 ****996 PP
2Auxin_resp1193.7e-39283365183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k + s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp rW +SkWr+Lk
  RWR86935.1 283 AWHAVSTGTMFTVYYKPRTSPSEFIVPFDQYMESVKANHSIGMRFKMRFEGEEAPEQRFTGTIVGIGDVDPKRWAGSKWRCLK 365
                 89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 861 aa     Download sequence    
MTSSELSVKG NCSNGRGESF SSGCSEPNEG GNAMKGVSAS MASGKDSEAA LYTELWHACA  60
GPLVTVPREG ELVFYFPQGH IEQVEASTNQ IADQQMPVYD LGWKILCRVM NVELKAEPDT  120
DEVFAQVTLL PEGMQDENAV EKLSVSPPPL RPHVHSFCKT LTASDTSTHG GFSVLRRHAD  180
ECLPPLDMAR QPPTQELVAK DLHGIEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA  240
FIFLRGENGE LRVGVRRAMR QQSNVPSSVI SSHSMHLGVL ATAWHAVSTG TMFTVYYKPR  300
TSPSEFIVPF DQYMESVKAN HSIGMRFKMR FEGEEAPEQR FTGTIVGIGD VDPKRWAGSK  360
WRCLKVRWDE TSSIPRPERV SPWKIEPALT PPVPNPLPIP RPKRPRANMV SSSPDSSVLT  420
REGPSKVTVD PSQLHGFSRV FQGQEITTLR SSFAESNESD TAQKPLAWAS AQGDDKTDIV  480
SAQRRLGTES WMALMRQERT YPDISSFRSH NDSHGFRSPI VNHCPDDSSL KKHFQDQEGK  540
FSLISGPCQW SMMASSPAGS MREASLKMPT QAGDMAYKNY GDVGYAGLGG YPLLQTLGVD  600
QHSGNWLMPL LPSSHVDNPS HHLGAEAQPA PLFQQDVKSK GEGNCKIFGI HLNSKPAPSE  660
PVQSQTTPTN EPEGYNQPVL KQQQSLEPDQ WTDPSKGTKV ADTALAGSDQ EKPFQSCTQL  720
HRDVQSKPQG GSTRSCTKVH KQGIALGRSV DLTKFNDYDE LIAELDEMFE FDGDLKGPSK  780
NWQIVYTDNE GDMMLVGDDP WQEFCSMVRK INIYTREEVQ RMNRVILNPR NEENLTASED  840
KSTTKEIKCL LSSPAVDLEN C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein