PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86438.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MIKC_MADS

Protein Properties

Length: 369aa MW: 42786 Da PI: 10.4147

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.7	5e-31	90	139	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ RWR86438.1 90 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 139 79***********************************************8 PP
2	K-box	112.6	3.8e-37	158	254	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+g s +e +++ +qqe++kL+++i Lq+ +Rhl+Ge L+s+++keL+qLe++Lek++++iRskKnell+++ie++qk+e elq++n++Lr+k++e RWR86438.1 158 SNGGSSTELNTQFYQQESSKLRQQIGILQNANRHLMGEALSSMTVKELKQLESRLEKGITRIRSKKNELLFAEIEYMQKREAELQNDNMYLRAKIAE 254 555568999*************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MKWPSPERER SVGLIAEKKL ESQNLRQLVG NHKGVSQVMG RCRREAPFLF LPSCPLPLED 60 QALLALIQNQ EKPTNKNSKR KMGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC 120 DAEVALIVFS TRGRLYEYAN NSVKATIERY KKVCADSSNG GSSTELNTQF YQQESSKLRQ 180 QIGILQNANR HLMGEALSSM TVKELKQLES RLEKGITRIR SKKNELLFAE IEYMQKREAE 240 LQNDNMYLRA KIAENEKNQQ HMSMSPAPEY DVMPSFDSRN FLQMIKGEGL RYLYRFITLI 300 WTINITLIEG YSSLYMLKEL RKGKKKSLIK PTHFKFLGCL LPTLSILIKD ILQMQLWNKF 360 HKFILAPKP

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MKWPSPERER SVGLIAEKKL ESQNLRQLVG NHKGVSQVMG RCRREAPFLF LPSCPLPLED  60
QALLALIQNQ EKPTNKNSKR KMGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC  120
DAEVALIVFS TRGRLYEYAN NSVKATIERY KKVCADSSNG GSSTELNTQF YQQESSKLRQ  180
QIGILQNANR HLMGEALSSM TVKELKQLES RLEKGITRIR SKKNELLFAE IEYMQKREAE  240
LQNDNMYLRA KIAENEKNQQ HMSMSPAPEY DVMPSFDSRN FLQMIKGEGL RYLYRFITLI  300
WTINITLIEG YSSLYMLKEL RKGKKKSLIK PTHFKFLGCL LPTLSILIKD ILQMQLWNKF  360
HKFILAPKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-103	MIKC_MADS family protein