PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR86081.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 603aa MW: 67258.1 Da PI: 8.7706

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR86081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.4e-08	64	98	1	35
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 +g WT+eEd++l +av + g++Wk+I + ++R RWR86081.1 64 KGGWTPEEDDKLRNAVDAFKGKCWKKIGLLVSLNR 98 688************************88776555 PP
2	Myb_DNA-binding	62.4	9e-20	147	193	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++d+vk++G++ W+ Ia+ ++ gR +kqc++rw+++l RWR86081.1 147 KGPWTQEEDDKIIDLVKKYGPRKWTVIANSLP-GRIGKQCRERWHNHL 193 79****************************.***********97 PP
3	Myb_DNA-binding	53.9	4.2e-17	199	242	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ + gRt++++k++w++ RWR86081.1 199 KDPWTLEEELALMQAHQIHGNK-WAEIAKVLH-GRTDNSIKNHWNS 242 689*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MEEKVPVKSE PRCVENKQSA AASSSSVSEG SSSLALRSPE ICGSATTTSS PPHRRTTGPI 60 RRAKGGWTPE EDDKLRNAVD AFKGKCWKKI GLLVSLNRKL SLVPVMYQEL KILRLVVWPC 120 AAELFQDRSE VQCLHRWQKV LNPELVKGPW TQEEDDKIID LVKKYGPRKW TVIANSLPGR 180 IGKQCRERWH NHLNPNIRKD PWTLEEELAL MQAHQIHGNK WAEIAKVLHG RTDNSIKNHW 240 NSSMRKKRDF YLATGKLPPV QKTGMQNGAK DVIKPVPIIS FCPNKGLDTN AQNSAEDNIS 300 LDAGQNKDLC KLEEGCYKQL ELSATQFSDI DASSSVPVNR ANNSDAMDCQ RQGSKTDLSC 360 NKCDSRPKSR GCDEHSKMDP AQNIAEAEMH SEITNFGSLY YKPPLLEGCD IPIDATLITM 420 YCPMQHVYKS NMLASPINYF TPSAKNCGSS EQSPESILKT AARSFPNTPS IFRKRRRETP 480 GPLRIGETNG PKSQDCLYTS EGKERPATYQ VQHGSLCLSS SESPACYGSD GVGPYNWKSF 540 NVSPPYRLMS KRTAVFKSVE KQLKFTLDEN KFDGNAKSKD FAIEGNSFIA GTDANHSRMP 600 GEN

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MEEKVPVKSE PRCVENKQSA AASSSSVSEG SSSLALRSPE ICGSATTTSS PPHRRTTGPI  60
RRAKGGWTPE EDDKLRNAVD AFKGKCWKKI GLLVSLNRKL SLVPVMYQEL KILRLVVWPC  120
AAELFQDRSE VQCLHRWQKV LNPELVKGPW TQEEDDKIID LVKKYGPRKW TVIANSLPGR  180
IGKQCRERWH NHLNPNIRKD PWTLEEELAL MQAHQIHGNK WAEIAKVLHG RTDNSIKNHW  240
NSSMRKKRDF YLATGKLPPV QKTGMQNGAK DVIKPVPIIS FCPNKGLDTN AQNSAEDNIS  300
LDAGQNKDLC KLEEGCYKQL ELSATQFSDI DASSSVPVNR ANNSDAMDCQ RQGSKTDLSC  360
NKCDSRPKSR GCDEHSKMDP AQNIAEAEMH SEITNFGSLY YKPPLLEGCD IPIDATLITM  420
YCPMQHVYKS NMLASPINYF TPSAKNCGSS EQSPESILKT AARSFPNTPS IFRKRRRETP  480
GPLRIGETNG PKSQDCLYTS EGKERPATYQ VQHGSLCLSS SESPACYGSD GVGPYNWKSF  540
NVSPPYRLMS KRTAVFKSVE KQLKFTLDEN KFDGNAKSKD FAIEGNSFIA GTDANHSRMP  600
GEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	473	477	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-121	MYB family protein