PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR85900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 21461.5 Da PI: 7.2713 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.7 | 1.7e-42 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+lapyfp ++p kf hk+FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ql++ela++k+ RWR85900.1 41 PCAACKILRRRCADKCILAPYFPPTEPLKFTTSHKVFGASNIIKLLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSQLQTELAKTKA 139 7***********************************************************************************************998 PP DUF260 100 e 100 e RWR85900.1 140 E 140 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MESSDTTGKT TSPMSPSPSP TSSTSPVASP PSPLPPIVVS PCAACKILRR RCADKCILAP 60 YFPPTEPLKF TTSHKVFGAS NIIKLLQELP ESQRADAVSS MVYEANARIR DPVYGCAGAI 120 CQLQKQVSQL QTELAKTKAE LLNMQTQRAN LVAIICMEAA HSQSQNQLDL AASPYTFHGN 180 NGGFVDEGNN LGAAWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-71 | LBD family protein |