PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR85825.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family HD-ZIP
Protein Properties Length: 687aa    MW: 74798.2 Da    PI: 6.51
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR85825.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181775357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  RWR85825.1 17 KYVRYTPEQVEALERVYMECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                6789*****************************************************97 PP
2bZIP_120.31.2e-06691111860
                 HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                 rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v++l 
  RWR85825.1  69 RRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLV 111
                 9***************************************985 PP
3START169.12.9e-531653732205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  e+  v+ +g  g+++l+++++
  RWR85825.1 165 IAEETLAEFLSKATGTAVDWVQMLGMKPGPDSIGIVAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLEVATVVPTGngGTIELIYMQT 262
                 7899******************************************************.8888888888*******8888888888777********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+  Rdf+++Ry+  l++g++vi+++S+++ +  p     +++vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lr+l++s+ + ++
  RWR85825.1 263 YAPTTLATaRDFWTLRYTTGLEDGSLVICERSLTPSTGGPAgppAPNFVRAEMLPSGYLIRPCEGGGSMINIVDHVDLDAWSVPEVLRPLYESSKVLAQ 361
                 ***********************************999998888******************************************************* PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 k++ a+l+++++
  RWR85825.1 362 KMTIAALRHLRQ 373
                 *******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    
MALSMHKDSS KQLDSSKYVR YTPEQVEALE RVYMECPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL VYDNGYMKQQ  120
LQNASVAVTD TSCESAVTSG QHQQQKPPPQ HPQRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMLGM KPGPDSIGIV AVSHNCSGVA ARACGLVSLE PTKVAEILKD RPSWYRDCRC  240
LEVATVVPTG NGGTIELIYM QTYAPTTLAT ARDFWTLRYT TGLEDGSLVI CERSLTPSTG  300
GPAGPPAPNF VRAEMLPSGY LIRPCEGGGS MINIVDHVDL DAWSVPEVLR PLYESSKVLA  360
QKMTIAALRH LRQIAQETGG EIVYGGGRQP AVLRTFSQRL SRGFNDAVNG FADDGWSLIS  420
SDGIEDVTIA INSSPNKLFG PHCNSTLLPA IGAGVLCAKA SMLLQNVPPA LLVRFLREHR  480
SEWADCGVDA YSAASLRSSS YAVPGLRSTG FPGSQVILPL AHTVEHEELL EVIRIEGHGF  540
LQDDGVLSRD MYLLQLCSGI DENAAGACAQ LVFAPIDESF ADDSPLLPSG FRVIPLEPKA  600
DGPTATRTLD LASALEGQGG ARSAGETASN VYNLRSVLTI AFQFTYENHL QDSVAAMARQ  660
YVRSVVTSVQ RVAMAIAPSR LSPQMGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein