PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR85802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LSD | ||||||||
Protein Properties | Length: 214aa MW: 22835.5 Da PI: 8.4957 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 48.3 | 1.6e-15 | 50 | 74 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGApsVRCa+C+t+ RWR85802.1 50 CSGCRNMLLYPRGAPSVRCAVCQTI 74 ***********************97 PP | |||||||
2 | zf-LSD1 | 48.5 | 1.4e-15 | 85 | 109 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y+rGA+sVRC++C+tV RWR85802.1 85 CGGCGTLLMYTRGATSVRCSCCQTV 109 ************************9 PP | |||||||
3 | zf-LSD1 | 47.5 | 2.9e-15 | 123 | 147 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V RWR85802.1 123 CGHCRTTLMYPYGAPSVKCAVCQYV 147 **********************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence |
MWEASKEETV DLNLASIQQK LGHRLSDSFI GFRILLVIDS LHLSKSQLVC SGCRNMLLYP 60 RGAPSVRCAV CQTITPGMEM SHLVCGGCGT LLMYTRGATS VRCSCCQTVN HARAANQVAQ 120 VNCGHCRTTL MYPYGAPSVK CAVCQYVTNV GMNNMWVPAP VHGPNGTTPA SLPSTSAPVP 180 HAKNQTVVVE NPMTVDESGK LVSNVVVGVT NGKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.2 | 2e-70 | LSD family protein |