PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85514.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

RAV

Protein Properties

Length: 350aa MW: 39191.3 Da PI: 9.5303

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85514.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	41.9	2.5e-13	59	107	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f + eAaka++ a+++++g RWR85514.1 59 SQFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNKEAEAAKAYDIAAQRYRG 107 68998778.8*****3.....5******99***********98 PP
2	B3	102.9	1.7e-32	185	284	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ tpsdv+k++rlv+pk++ae+h g+ +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gLk+gD+v F+++ e++l++ RWR85514.1 185 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqVGSACKGMLLNFEDGQGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLKAGDVVSFQRSTGAEKQLYID 283 89***********************9995556699************************************************876566667776 PP E CS B3 96 v 96 + RWR85514.1 284 W 284 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDSSCIDETS SDSISMFTTP VGVLSKPPST GIQRVGSGSS VVVDSDSGVE AESRKLPSSQ 60 FKGVVPQPNG RWGAQIYEKH QRVWLGTFNK EAEAAKAYDI AAQRYRGRDA VTNFKPLSET 120 DDQLETYFLN SHSKVEIVDM LRKHTYNDEL QQCKRNCAGS NIDTKQKNGE FAGMNATQKA 180 REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQVGSACK GMLLNFEDGQ GKVWRFRYSY 240 WNSSQSYVLT KGWSRFVKEK GLKAGDVVSF QRSTGAEKQL YIDWKERTGG YMVPLVPAQP 300 TVQVVRLFGV NIFKIPVGNA VNSGEWNGKR TRDMEFFPNE FCKKQCIGAL

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDSSCIDETS SDSISMFTTP VGVLSKPPST GIQRVGSGSS VVVDSDSGVE AESRKLPSSQ  60
FKGVVPQPNG RWGAQIYEKH QRVWLGTFNK EAEAAKAYDI AAQRYRGRDA VTNFKPLSET  120
DDQLETYFLN SHSKVEIVDM LRKHTYNDEL QQCKRNCAGS NIDTKQKNGE FAGMNATQKA  180
REQLFEKAVT PSDVGKLNRL VIPKQHAEKH FPLQVGSACK GMLLNFEDGQ GKVWRFRYSY  240
WNSSQSYVLT KGWSRFVKEK GLKAGDVVSF QRSTGAEKQL YIDWKERTGG YMVPLVPAQP  300
TVQVVRLFGV NIFKIPVGNA VNSGEWNGKR TRDMEFFPNE FCKKQCIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-125	RAV family protein