PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85479.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 381aa MW: 41955.1 Da PI: 8.7885

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	158	180	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ Fs +++++ H+ + H RWR85479.1 158 PCPDCGEIFSKSESMELHQAVrH 180 7******************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MAEASHPRKS TKKIHHNQNH HPHKMEKKPP SWASVGTLFT CKHHHHTAEC NRKCKRIGFS 60 VSLCSLRDNT KVMHKTETAS PETCKKWVSL SACNSSNRSM KVPLIEINGA ITSASSTAGG 120 SFRGMQLKKL SGCYECHMVI DPSNGVARDP SLRTSICPCP DCGEIFSKSE SMELHQAVRH 180 AVSELGPEDS SKNIVEIIFQ SSWLKKQSPV CKIDRILKIH NSQKTVTKFE EYRDSIKAKA 240 NKLPKKYPRC IADGNELLRF YCTTFICSIG INGSSNLCNS IPNCNICNII RNGFKTDGVT 300 GICTTATSGK AHDNAQFSSE DEKGAMLVCR VIAGRVKKID DSAEEFDSVA GNVGIYSNLD 360 ELSVINPRAI LPCFVVIYGG F

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MAEASHPRKS TKKIHHNQNH HPHKMEKKPP SWASVGTLFT CKHHHHTAEC NRKCKRIGFS  60
VSLCSLRDNT KVMHKTETAS PETCKKWVSL SACNSSNRSM KVPLIEINGA ITSASSTAGG  120
SFRGMQLKKL SGCYECHMVI DPSNGVARDP SLRTSICPCP DCGEIFSKSE SMELHQAVRH  180
AVSELGPEDS SKNIVEIIFQ SSWLKKQSPV CKIDRILKIH NSQKTVTKFE EYRDSIKAKA  240
NKLPKKYPRC IADGNELLRF YCTTFICSIG INGSSNLCNS IPNCNICNII RNGFKTDGVT  300
GICTTATSGK AHDNAQFSSE DEKGAMLVCR VIAGRVKKID DSAEEFDSVA GNVGIYSNLD  360
ELSVINPRAI LPCFVVIYGG F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	3e-95	C2H2 family protein