PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85411.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 304aa MW: 33045.1 Da PI: 6.6216

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85411.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.8	1e-39	105	206	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v+ il+lqqq+ +l+ el++++ RWR85411.1 105 PCGACKFLRRKCVSGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPAHRRHDAVVTISYEAQARLSDPVYGCVSAILALQQQVTTLQMELSVVQ 203 7*********************9989*******************************************************************99 PP DUF260 99 eel 101 ++l RWR85411.1 204 TQL 206 885 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MHPSLSPLPH PSLPPSPPFP HSINPNYPII DDRNTTTTTT TTIIDNMDSS ADRASDKSWD 60 RRRGTSKKVA QVNVDGGKRG SVVVKPRDEL AATADGPPLA PATSPCGACK FLRRKCVSGC 120 VFAPYFGSDQ GAARFAAVHK VFGASNVSKL LLHIPAHRRH DAVVTISYEA QARLSDPVYG 180 CVSAILALQQ QVTTLQMELS VVQTQLMNSR LAIANALQVQ QQQQQQQQNI AVLQPAYSNN 240 SVTSNNLVNI STFPSSFDLT DTAPSSRSFE PLQITQPLQD EEEDEEESGN PIIFADAFLQ 300 QRVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	7e-67	LBD family protein