PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR85335.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 259aa MW: 28016.9 Da PI: 8.1481 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.1 | 4.4e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C++ C ++p++ p++q++++ +++k++G++ +++ll+a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e+ RWR85335.1 4 SCNGCRVLRKGCSDTCSIRPCLdwiqnPESQANATLFLAKFYGRAGLMNLLSAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEA 102 6************************************************************************************************99 PP DUF260 95 allke 99 +l ++ RWR85335.1 103 VLDGK 107 87665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MKMSCNGCRV LRKGCSDTCS IRPCLDWIQN PESQANATLF LAKFYGRAGL MNLLSAGPEH 60 LRPAVFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLDGKPIV QATTDSPPIT 120 GPPAKAYDIR HVSKKENSVI QELHRVKARG RFKEPNSRLD SAVDRFSKPG ERNCRGPSRD 180 SSLTHETESG SSVEAALVGR AEPSSRADAE LELELRLGIG RVSQEGPVHA MGNVAKLGDL 240 DQLDAYTCNA QLGLQLSGI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-80 | LBD family protein |