PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR85112.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HD-ZIP

Protein Properties

Length: 687aa MW: 76550.3 Da PI: 6.2792

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR85112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	67	122	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL ++lgL+ qVk+WFqN+R+++k RWR85112.1 67 KKRYHRHTQRQIQEMEAFFKECPHPDDKQRRELGRELGLEPLQVKFWFQNKRTQMK 122 688999***********************************************999 PP
2	START	128.6	7.3e-41	332	442	93	206
EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgla 190 +m+ae+q+++plvp R+++f+Ry++q+++g+w++vdvS+d ++ p ++R++++pSg++i+++sng++kvtwvehv+ + +++h +++ +v+ gla RWR85112.1 332 VMSAEFQVPTPLVPaRESYFARYCKQHNEGTWAVVDVSLDCLRPGP----LMRCRRRPSGCVIQEMSNGYTKVTWVEHVEADYKMIHRMFKTIVSFGLA 426 79*****************************************9....6******************************************** PP HHHHHHHHHTXXXXXX CS START 191 egaktwvatlqrqcek 206 +gak+w atl++qce+ RWR85112.1 427 FGAKRWIATLDHQCER 442 ************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MFQPNNMVEG EQQQQLQNVP QEMNNNTPQR EMPKVREEEL ENKSGSDIHD GASGSGDDQD 60 QNQPARKKRY HRHTQRQIQE MEAFFKECPH PDDKQRRELG RELGLEPLQV KFWFQNKRTQ 120 MKTHHERHEN TQLRTENECL RMENMKFKEA LSSAACLTCG GPATIGERSY NEQQLRLENA 180 RLREEIERIS GIASKYVGKP MLPQFSLAPR VPSHISLDPP VGSFGMQLGM GGEMYGATEI 240 IQSMPQPEID NRKVVELVVV AMDELIRMAT IGQPLWTPAY DGSIEVLSED EYVRLFPQGI 300 GPKRLGMSSE ATRETAVVGM HHINFVEILM DVMSAEFQVP TPLVPARESY FARYCKQHNE 360 GTWAVVDVSL DCLRPGPLMR CRRRPSGCVI QEMSNGYTKV TWVEHVEADY KMIHRMFKTI 420 VSFGLAFGAK RWIATLDHQC ERLAIVMASG NAGGDGVITS QEGRKSMVKL SERMVTSFCA 480 GVCGSTAHSW TLVSWNGAED VRVMMKESIN DPGRPSGIVL CASTSFWLPQ SHKRVFNFLS 540 SENSRNEWDI LASGGTVEEM ANLVTGREPG NSISLLRVNS LNANHSNMVI LQECCTDPTG 600 SFVIYAPVDI GSMNMVLNGG DPDYVALLPS GFSLFPDGIG GSLLTVAFQI LVDSVPTAKL 660 SLASITTVNS LISSTVGKMK ALIREKA

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MFQPNNMVEG EQQQQLQNVP QEMNNNTPQR EMPKVREEEL ENKSGSDIHD GASGSGDDQD  60
QNQPARKKRY HRHTQRQIQE MEAFFKECPH PDDKQRRELG RELGLEPLQV KFWFQNKRTQ  120
MKTHHERHEN TQLRTENECL RMENMKFKEA LSSAACLTCG GPATIGERSY NEQQLRLENA  180
RLREEIERIS GIASKYVGKP MLPQFSLAPR VPSHISLDPP VGSFGMQLGM GGEMYGATEI  240
IQSMPQPEID NRKVVELVVV AMDELIRMAT IGQPLWTPAY DGSIEVLSED EYVRLFPQGI  300
GPKRLGMSSE ATRETAVVGM HHINFVEILM DVMSAEFQVP TPLVPARESY FARYCKQHNE  360
GTWAVVDVSL DCLRPGPLMR CRRRPSGCVI QEMSNGYTKV TWVEHVEADY KMIHRMFKTI  420
VSFGLAFGAK RWIATLDHQC ERLAIVMASG NAGGDGVITS QEGRKSMVKL SERMVTSFCA  480
GVCGSTAHSW TLVSWNGAED VRVMMKESIN DPGRPSGIVL CASTSFWLPQ SHKRVFNFLS  540
SENSRNEWDI LASGGTVEEM ANLVTGREPG NSISLLRVNS LNANHSNMVI LQECCTDPTG  600
SFVIYAPVDI GSMNMVLNGG DPDYVALLPS GFSLFPDGIG GSLLTVAFQI LVDSVPTAKL  660
SLASITTVNS LISSTVGKMK ALIREKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	HD-ZIP family protein