PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84973.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 551aa MW: 60560.8 Da PI: 6.6825

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	56.5	4.9e-18	250	299	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq RWR84973.1 250 RSKHSATEQRRRSKINDRFQILRELIPHS----DQKRDKASFLLEVIEYIQFLQ 299 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MELPQPRPYG AEGKKPTNDF LSLYTDSSFQ QHQDPRPSQG FYLKTHDFLQ PLERVGKSNN 60 SNEGEKEISS ADKASSTEHI LPGGIGTYSI SHIPHFGRGV VKPEGSVYTV VQASSTERNG 120 EASKANSNCS SYNGGAFTLW EGSAGKDKML VKDKVGESHL TREPSENSPQ FPPFISGNSG 180 FCSLTSSSNF QGQKIQGFME MMKSIKGLQE EEDDDDEDDY VKKEVVSSQK GDIGVKIEMK 240 GNDQRANTPR SKHSATEQRR RSKINDRFQI LRELIPHSDQ KRDKASFLLE VIEYIQFLQE 300 KVNKHEAAFP GWNQDNMKLT QWRHNHGLGE SIADHSQALK NGASPGLMFA GKLDGNHISV 360 TPSMLGNLQN PVESDNLSTG TRYKALDHHT GLENKAASVP IRLQQNLNSS VGRNNGVVQP 420 QPRLLSDAEN IASQSQQHLW QRSCPAESDV LNEQEDLAIE GGTIQLSSVY SQGLLSSLTH 480 ALQSSGIDLS QASISVQIDL GKRAISRPTT ASSAKDHGDP SSCNRAMPHS RVASSGEDSE 540 QTHKRPRTDN R

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MELPQPRPYG AEGKKPTNDF LSLYTDSSFQ QHQDPRPSQG FYLKTHDFLQ PLERVGKSNN  60
SNEGEKEISS ADKASSTEHI LPGGIGTYSI SHIPHFGRGV VKPEGSVYTV VQASSTERNG  120
EASKANSNCS SYNGGAFTLW EGSAGKDKML VKDKVGESHL TREPSENSPQ FPPFISGNSG  180
FCSLTSSSNF QGQKIQGFME MMKSIKGLQE EEDDDDEDDY VKKEVVSSQK GDIGVKIEMK  240
GNDQRANTPR SKHSATEQRR RSKINDRFQI LRELIPHSDQ KRDKASFLLE VIEYIQFLQE  300
KVNKHEAAFP GWNQDNMKLT QWRHNHGLGE SIADHSQALK NGASPGLMFA GKLDGNHISV  360
TPSMLGNLQN PVESDNLSTG TRYKALDHHT GLENKAASVP IRLQQNLNSS VGRNNGVVQP  420
QPRLLSDAEN IASQSQQHLW QRSCPAESDV LNEQEDLAIE GGTIQLSSVY SQGLLSSLTH  480
ALQSSGIDLS QASISVQIDL GKRAISRPTT ASSAKDHGDP SSCNRAMPHS RVASSGEDSE  540
QTHKRPRTDN R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	1e-94	bHLH family protein