PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84629.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 848aa MW: 95392.7 Da PI: 6.3073

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.9	1.9e-23	130	231	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++k+i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l RWR84629.1 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDIEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVIFI--WNEDNQL 224 99***************************8544444..48********************************************..8889999 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ RWR84629.1 225 LLGIRRS 231 **997 PP
2	Auxin_resp	114.6	8.9e-38	256	339	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPr+s+seFv++++k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+v+WpnS+Wrs+k RWR84629.1 256 AAHAAATNSRFTIFYNPRSSPSEFVISLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDQVHWPNSHWRSVK 339 79******************************87599****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence
MAKMKFSTPG LSHHAQDGEK RCLNTELWHA CAGPLVSLPA VGGRVVYFPQ GHSEQVAALT 60 HKEVNGHMPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQL TLQPLSPQEQ KDAYLPVELG 120 IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDIEW 180 KFKHIFRGQP KRHLLTTGWS VFVSAKRLIA GDSVIFIWNE DNQLLLGIRR SNRTQTVMPS 240 SVISSDSMHI GLLAAAAHAA ATNSRFTIFY NPRSSPSEFV ISLSKYVKAV FHTRVSVGMR 300 FRMLFETEES SVRRYMGTIT GISDLDQVHW PNSHWRSVKA EKTMASCCTF LARFSEGQLT 360 YYGLMGQAYD VDDNDKNDDG ITYYGYNNNK EDEKNGFMWL RGDAGEQGFQ SMGFRSFGLG 420 HLMQQRPDPL PLGNQHDHYQ GMAGAAFQDI KSGDSLKQQF LNFQQPFQFP QQLCRPNPLL 480 QQQFFQQMQP QQIIHAQTHN VSDKQYQNHN FQHQFLQTFN DQQKQQQQQQ QQQQNQETYQ 540 KTFQIPNDEI QQQQPHFPTG LLQKSVFPDS TRTFSTSPTP SCIQNTWGSL HPEGNANIVN 600 FSRMGQTIIS DQHHSSWVPD FAIPQVSSFG NTLLLPPFPG KDSTVEQQNC TADSQTRTLF 660 GVNIDSSQVL PSQAPNFRNT SIDTDVSTMP LASSSFQTSL YGSIDDTSGL LQNVGQIDMA 720 SRTFVKVYKS GSVGRSLDIT RFSSYHELRE ELGQMFGIED QLEDPLRSGW QLVFVDREND 780 VLLLGDDPWE AFVNNVWYIK VLSPEEVQKL GKQVVESLNL TGGQNLSSSS CEASNLVSGI 840 SSVGSLEY

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence

MAKMKFSTPG LSHHAQDGEK RCLNTELWHA CAGPLVSLPA VGGRVVYFPQ GHSEQVAALT  60
HKEVNGHMPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQL TLQPLSPQEQ KDAYLPVELG  120
IPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDIEW  180
KFKHIFRGQP KRHLLTTGWS VFVSAKRLIA GDSVIFIWNE DNQLLLGIRR SNRTQTVMPS  240
SVISSDSMHI GLLAAAAHAA ATNSRFTIFY NPRSSPSEFV ISLSKYVKAV FHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDQVHW PNSHWRSVKA EKTMASCCTF LARFSEGQLT  360
YYGLMGQAYD VDDNDKNDDG ITYYGYNNNK EDEKNGFMWL RGDAGEQGFQ SMGFRSFGLG  420
HLMQQRPDPL PLGNQHDHYQ GMAGAAFQDI KSGDSLKQQF LNFQQPFQFP QQLCRPNPLL  480
QQQFFQQMQP QQIIHAQTHN VSDKQYQNHN FQHQFLQTFN DQQKQQQQQQ QQQQNQETYQ  540
KTFQIPNDEI QQQQPHFPTG LLQKSVFPDS TRTFSTSPTP SCIQNTWGSL HPEGNANIVN  600
FSRMGQTIIS DQHHSSWVPD FAIPQVSSFG NTLLLPPFPG KDSTVEQQNC TADSQTRTLF  660
GVNIDSSQVL PSQAPNFRNT SIDTDVSTMP LASSSFQTSL YGSIDDTSGL LQNVGQIDMA  720
SRTFVKVYKS GSVGRSLDIT RFSSYHELRE ELGQMFGIED QLEDPLRSGW QLVFVDREND  780
VLLLGDDPWE AFVNNVWYIK VLSPEEVQKL GKQVVESLNL TGGQNLSSSS CEASNLVSGI  840
SSVGSLEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30330.1	0.0	ARF family protein