PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84588.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 547aa MW: 61133.6 Da PI: 5.5423

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84588.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.4e-09	240	279	8	47
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ l++++ ++G+g+Wk+I+r Rt+ q+ s+ qk+ RWR84588.1 240 LHRLFLNGLLEYGKGDWKSISRDAVVSRTPAQVASHAQKH 279 799***********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MAGEKASPLP MSPSLANESD SSAQTEWTEL ENKLFDNVLA MFSEGTPDRW EKLAKMVPGK 60 TPEGVEKHFK LLVKDVEHIE PHQISVPDGL DKSEEKKMVE VVNSGDVKEK GKSKEKRVVL 120 RKDGNPSNKG KGRLWTEEEH RFVGTYFFSN GLRWDGHGFA TYIFCVFSFS DIFTSCFFKS 180 SPLTASNYRI IIITTITITI IAVVVFFSSL HYSIITNYGV CLKFKEPLQE DLNPELMLSL 240 HRLFLNGLLE YGKGDWKSIS RDAVVSRTPA QVASHAQKHY LRMDNPGMRE RQRPRLSENR 300 DMDESTFSSN INKPIIPNPS PYPFMNFSPM AGTFFQTFNT PPPMEGGFSG IIPQLPPNGI 360 LPQLPPNGLF PEQPPYLYAG FGSFGENPPN NLVLTDGSFG EHSLNNLFVT DGMSHLTNFG 420 SFGEHSLSNP FLTDGMSHTN FGSFGEHSLS NMFLTDGMSH TNFESFGEHS LSNLFPTDGM 480 SHLTNFGGFG EQQPNNLSFP LNNSFTDEFG SFQGTFGGDP SGQFSYDCSD YLPPYEEIYH 540 QVRRGGH

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MAGEKASPLP MSPSLANESD SSAQTEWTEL ENKLFDNVLA MFSEGTPDRW EKLAKMVPGK  60
TPEGVEKHFK LLVKDVEHIE PHQISVPDGL DKSEEKKMVE VVNSGDVKEK GKSKEKRVVL  120
RKDGNPSNKG KGRLWTEEEH RFVGTYFFSN GLRWDGHGFA TYIFCVFSFS DIFTSCFFKS  180
SPLTASNYRI IIITTITITI IAVVVFFSSL HYSIITNYGV CLKFKEPLQE DLNPELMLSL  240
HRLFLNGLLE YGKGDWKSIS RDAVVSRTPA QVASHAQKHY LRMDNPGMRE RQRPRLSENR  300
DMDESTFSSN INKPIIPNPS PYPFMNFSPM AGTFFQTFNT PPPMEGGFSG IIPQLPPNGI  360
LPQLPPNGLF PEQPPYLYAG FGSFGENPPN NLVLTDGSFG EHSLNNLFVT DGMSHLTNFG  420
SFGEHSLSNP FLTDGMSHTN FGSFGEHSLS NMFLTDGMSH TNFESFGEHS LSNLFPTDGM  480
SHLTNFGGFG EQQPNNLSFP LNNSFTDEFG SFQGTFGGDP SGQFSYDCSD YLPPYEEIYH  540
QVRRGGH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-16	MYB family protein