PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84565.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Nin-like

Protein Properties

Length: 957aa MW: 106859 Da PI: 6.7713

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.1	3.1e-27	640	690	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+++Fs +++dAAk++gvc+T+LKriCRqyGI+RWP+R i+++ RWR84565.1 640 EKKISLQVLQQHFSRSLNDAAKSIGVCPTTLKRICRQYGIPRWPSRTIRKV 690 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 957 aa Download sequence
MMGDSISQGG AMLGMGSMTD FPLEFDLMND FLLGGCGLDA SNGYDLFQRG NPTSVLDSSC 60 SSLAEINNCN STQNLPQTIE LDDQERSVLL DNQPSVEAQT QSLIRSKLLG RNSFKTAENS 120 GQLESYPASG VWNFNEYGKI MSPSIELIQR CRSEPREDPC PASSVKERFA HAVKYIKEFT 180 EEIDVLVQTW VPIKKGGRCF LTTFDQPFSL DPSCQRLVNY RTISLNYHFS AEVDSNEAVG 240 LPGRVFLGRL PEWTPDVRYF RSDEYARVDH AQQNDVRSTV ALPVFEQGNP VCLGVVEVVR 300 TTQKINYSLE LESISSVLQA VNLRSSDFAS VPHLMVSNHN SYQVALLEIV EVLRAVCETH 360 RLPLAQTWVP CIWQGKKGSR HSNENYTNCV STADIACYVT DPCIWGFHEA CSEHHLLRGQ 420 GVAGKAFTTN QPCFSPDITA FRRSEYPLSH YARIFGLRAA VAIRLRCIYT GNADYVLEFF 480 LPIHCQDNEE QKLMLNSLSM IVQQVSQSLR VVRDRELEIE LVRSGGVIRS FAGDDERPNQ 540 EKIPTEGTKH NSVTAQMKGK ASGLQPTIPL ECQKEIKEFS ARTHWDCPEG STRTSEIFPE 600 LNQHHRDSIK SSVSCGGSSF IEQSVSNVVK VCKKRSTKIE KKISLQVLQQ HFSRSLNDAA 660 KSIGVCPTTL KRICRQYGIP RWPSRTIRKV GHSLERLKVV IDSVQGVERA FQLSSLYPDL 720 PHACSSGFTS PRMSKTSTLS QPKKITGPPT SSNLHPEGVF SIKSTPSKSP SSSCSNSSSS 780 GLCYSTREQQ CHASQLVVSE DTSMAEIEGG VIKQAYCEAK LYASTKDEQK STACSLTQIS 840 DSEDPSLERI SHFPRDRSSL KVKVMYGDDK IRLNMKPSWG FQDLQQEVAK RFNIDDAHRF 900 VLKYLDDESE WVLLTCDDDL HECKDIYKSL CGHVIKLSVH HVAQSRTENS LGSSELS

Sequence ? help Back to Top

Protein Sequence Length: 957 aa Download sequence

MMGDSISQGG AMLGMGSMTD FPLEFDLMND FLLGGCGLDA SNGYDLFQRG NPTSVLDSSC  60
SSLAEINNCN STQNLPQTIE LDDQERSVLL DNQPSVEAQT QSLIRSKLLG RNSFKTAENS  120
GQLESYPASG VWNFNEYGKI MSPSIELIQR CRSEPREDPC PASSVKERFA HAVKYIKEFT  180
EEIDVLVQTW VPIKKGGRCF LTTFDQPFSL DPSCQRLVNY RTISLNYHFS AEVDSNEAVG  240
LPGRVFLGRL PEWTPDVRYF RSDEYARVDH AQQNDVRSTV ALPVFEQGNP VCLGVVEVVR  300
TTQKINYSLE LESISSVLQA VNLRSSDFAS VPHLMVSNHN SYQVALLEIV EVLRAVCETH  360
RLPLAQTWVP CIWQGKKGSR HSNENYTNCV STADIACYVT DPCIWGFHEA CSEHHLLRGQ  420
GVAGKAFTTN QPCFSPDITA FRRSEYPLSH YARIFGLRAA VAIRLRCIYT GNADYVLEFF  480
LPIHCQDNEE QKLMLNSLSM IVQQVSQSLR VVRDRELEIE LVRSGGVIRS FAGDDERPNQ  540
EKIPTEGTKH NSVTAQMKGK ASGLQPTIPL ECQKEIKEFS ARTHWDCPEG STRTSEIFPE  600
LNQHHRDSIK SSVSCGGSSF IEQSVSNVVK VCKKRSTKIE KKISLQVLQQ HFSRSLNDAA  660
KSIGVCPTTL KRICRQYGIP RWPSRTIRKV GHSLERLKVV IDSVQGVERA FQLSSLYPDL  720
PHACSSGFTS PRMSKTSTLS QPKKITGPPT SSNLHPEGVF SIKSTPSKSP SSSCSNSSSS  780
GLCYSTREQQ CHASQLVVSE DTSMAEIEGG VIKQAYCEAK LYASTKDEQK STACSLTQIS  840
DSEDPSLERI SHFPRDRSSL KVKVMYGDDK IRLNMKPSWG FQDLQQEVAK RFNIDDAHRF  900
VLKYLDDESE WVLLTCDDDL HECKDIYKSL CGHVIKLSVH HVAQSRTENS LGSSELS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein