PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR84209.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 427aa    MW: 46873.9 Da    PI: 9.2074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR84209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.92.6e-11626425
                ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                elCr+f+r G C+yGdrC+F H
  RWR84209.1  6 ELCRNFQR-GSCQYGDRCRFVH 26
                8*******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    
MSRRNELCRN FQRGSCQYGD RCRFVHATQQ QQKPNPSGFG PQSGSRFNQQ QQKPNPFGFG  60
AQSGSQFNQQ QQKPNPFGFG ARNSSQSKGT SDIGTKYQNE VKPFENKWIR SSTVASGNAT  120
PSRQTDNQPR VVHKCTDPES CKRQIAENLK QERPLWMLTC YGHSENRPCD IFGDISYEEL  180
RAVAYQDSNL GMSHQAIVER ERNLLNSKLT EFENLLRNPY ILSSPGSPAT TTPFRATNSN  240
ATSMGVQNNM PIPVSSFSQL GSSINSVYNT RPLAPSNSAI GPSAPSPFQI SSQAPGGFGI  300
NSSTFGSSGP FGSKQPTQLF GSAQTSNNLN FNNGVVNVGS SLPSFSQAPS PFFPSSASNL  360
LTTLVNGAKD AANVAEDEKN TKVPEDIANQ LKKEDMAIWL KKEWKRGEIP EEAPPDWLIE  420
WLAKDSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-54C3H family protein