PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84188.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 1123aa MW: 124000 Da PI: 5.8288

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24	6.9e-08	358	377	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++fa+ G C+ G+rCkF+H RWR84188.1 358 LCKYFAE-GRCRNGERCKFSH 377 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 1123 aa Download sequence
MESASLGRDT VTENVKKRIS KWDLVADPHS ATETVPDNSK SGDAADVHHD KDSSSGWNLS 60 KSASNHIRKW SEMGGDHTMR SKDSLDESCW EPMPEGKRER KYSSVDTGDE TISPTMRPYG 120 ASDAPRVDAW RQHSRSRSPK SGWGRSYRYS SQISSVPFHE LTLVYYAGVE AEVHSVLGVR 180 QKAGLIGVEM EGVDQLHPAG ILLQGSAGEV VNAGSLIRMV IMMIGATLTV VILKTEVIDK 240 KGEGFLGYAR DEAFTDPEVQ SGYPQDRLLH GYEGHYDGDR EKREPQRNSR SSTHCNDFLK 300 SKCYRGSACK YVHDIVNADG YGRWSSKDAT RERSHGRRED TSFGHDQRRE SFRSGNGLCK 360 YFAEGRCRNG ERCKFSHQGP TQGSSEWKSQ DAGLGDDSIM GNRSWEGPKW SDKDSGSEVA 420 FPENQSWNDP KWSDNAGDRN LSSNQSSGHS KWGDNTCDIN FTSNQSLDRP KWGDKDSDKN 480 ISISPWCNDT NNIKADDSGN RSWKGPTWGD KAALTNISNS PPWKSSDDGT RRVVSDSRAA 540 DQFCNGADMA SAGASRDGYP QNMGGKESKS NAQDSHTENP EAEGERQHVS SSATLTQSVA 600 LENSYIQQHP GLKADNTVFP CEDRNKFTGS TRVQHENLFG MSAIVPSPGQ SSVESAQNQH 660 TLLPQPASNA DSFKPNEQNQ QMAFSPNVQN LNLDRQSQQV ALPPPNAQNF NLSGLNQLIF 720 PSLPSGPNVN LNGQSQPLAP PLLSGQTDSS GQSQQLMMQA PSEARDPVLL GKEESSKNPD 780 LPQPTSGNPV PQNAVTNEQG TQLTDLSASL AQIFGNGQQL PQLYATLNHL SANGLVPSHP 840 YSESNSAMPS EPLVAPFIHP NQGLLPQKQY DPIQGSTESI KPAVTNQLPV PRFPVDIDEQ 900 KSASFQQLQV PQQIMAPSSV TDGRDECGPS KIGSLEQSNN ENNELSMDVL AVEVNEEATI 960 QCQKDQEMSH LKDMNVDDQV DEGKRNKDEK GMRMFKFALV EFVKELLKPT WKEGHMSREA 1020 HKTIVKKVVD KVTGSMQGPH LPQTQEKIDQ YLSFSKPKLT KLVDVSFLFF FLFLSLETLG 1080 ICGKIFEDLR TGSKNLSGFF PFFYELKTSQ IFVYLIGILY IQR

Sequence ? help Back to Top

Protein Sequence Length: 1123 aa Download sequence

MESASLGRDT VTENVKKRIS KWDLVADPHS ATETVPDNSK SGDAADVHHD KDSSSGWNLS  60
KSASNHIRKW SEMGGDHTMR SKDSLDESCW EPMPEGKRER KYSSVDTGDE TISPTMRPYG  120
ASDAPRVDAW RQHSRSRSPK SGWGRSYRYS SQISSVPFHE LTLVYYAGVE AEVHSVLGVR  180
QKAGLIGVEM EGVDQLHPAG ILLQGSAGEV VNAGSLIRMV IMMIGATLTV VILKTEVIDK  240
KGEGFLGYAR DEAFTDPEVQ SGYPQDRLLH GYEGHYDGDR EKREPQRNSR SSTHCNDFLK  300
SKCYRGSACK YVHDIVNADG YGRWSSKDAT RERSHGRRED TSFGHDQRRE SFRSGNGLCK  360
YFAEGRCRNG ERCKFSHQGP TQGSSEWKSQ DAGLGDDSIM GNRSWEGPKW SDKDSGSEVA  420
FPENQSWNDP KWSDNAGDRN LSSNQSSGHS KWGDNTCDIN FTSNQSLDRP KWGDKDSDKN  480
ISISPWCNDT NNIKADDSGN RSWKGPTWGD KAALTNISNS PPWKSSDDGT RRVVSDSRAA  540
DQFCNGADMA SAGASRDGYP QNMGGKESKS NAQDSHTENP EAEGERQHVS SSATLTQSVA  600
LENSYIQQHP GLKADNTVFP CEDRNKFTGS TRVQHENLFG MSAIVPSPGQ SSVESAQNQH  660
TLLPQPASNA DSFKPNEQNQ QMAFSPNVQN LNLDRQSQQV ALPPPNAQNF NLSGLNQLIF  720
PSLPSGPNVN LNGQSQPLAP PLLSGQTDSS GQSQQLMMQA PSEARDPVLL GKEESSKNPD  780
LPQPTSGNPV PQNAVTNEQG TQLTDLSASL AQIFGNGQQL PQLYATLNHL SANGLVPSHP  840
YSESNSAMPS EPLVAPFIHP NQGLLPQKQY DPIQGSTESI KPAVTNQLPV PRFPVDIDEQ  900
KSASFQQLQV PQQIMAPSSV TDGRDECGPS KIGSLEQSNN ENNELSMDVL AVEVNEEATI  960
QCQKDQEMSH LKDMNVDDQV DEGKRNKDEK GMRMFKFALV EFVKELLKPT WKEGHMSREA  1020
HKTIVKKVVD KVTGSMQGPH LPQTQEKIDQ YLSFSKPKLT KLVDVSFLFF FLFLSLETLG  1080
ICGKIFEDLR TGSKNLSGFF PFFYELKTSQ IFVYLIGILY IQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-12	C3H family protein