PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR84078.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 336aa MW: 37482.5 Da PI: 8.7992

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR84078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.7e-10	14	48	1	33
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..T CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..k 33 +g+WT+eEde+lv+ ++ g+Wk I++ g + RWR84078.1 14 KGPWTPEEDEKLVQHLQKQDHGSWKQISKLAGreT 48 79****************************99543 PP
2	Myb_DNA-binding	58.7	1.3e-18	109	154	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE+e +++++ lG++ W+tIa +++ gRt++++k++w+++l RWR84078.1 109 RGKFSQEEEETILKLHSILGNR-WSTIATHLP-GRTDNEIKNFWNTHL 154 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRYPPCERN GLKKGPWTPE EDEKLVQHLQ KQDHGSWKQI SKLAGRETKL SPSLSHTHTH 60 LPFETTCEAT SWGVLNIDII SVYAFAGLNR CGKSCRLRWT NYLRPDIKRG KFSQEEEETI 120 LKLHSILGNR WSTIATHLPG RTDNEIKNFW NTHLKKKVKQ MGFDPITGRL PTDIFAGLPH 180 LIALANLTDS MGIHTWGEQA VRLKEAVQLA KFQYIQCLLS ATSMASNSSS SLRSNSAMAL 240 DQSQLENASA FSLGLFTSQP LHDNVPFNPA PGMQSPSSFQ QLKSNEISQK PNFTGFSQGD 300 YTQKLPMPSP PSLLIESNGD ACSTSTIQWS WSSLLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-75	MYB family protein