PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83956.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 704aa MW: 77034.3 Da PI: 6.8161

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.2	3.2e-23	123	224	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++++ l RWR83956.1 123 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RTENGDL 217 89**************************996555555..89*******************************************..4588999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ RWR83956.1 218 CVGIRRA 224 **997 PP
2	Auxin_resp	119.3	3.1e-39	292	375	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dpvrWpnS+Wr+L+ RWR83956.1 292 AAALAANGQPFEVVYYPRASTPEFCVKAAAVRAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPVRWPNSPWRLLQ 375 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MIMFGDSSKE LMKETEKCLD SQLWHACAGG MVQMPPVNSK VYYFPQGQAE HANGNVDFGN 60 CPRIPALILC RVAAVKFLAD PETDEVYAKI QLVPVRSGEA DYLEDDGGLS GNGAEVADKP 120 ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG EIWKFRHIYR 180 GTPRRHLLTT GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGVGG GPESPSGWNS 240 SAGNCVSPFG GFSVFLKEDE RLMRNANGGM SNSSGGGLRG RGRVKPDSVI EAAALAANGQ 300 PFEVVYYPRA STPEFCVKAA AVRAAMRIQW CSGMRFKMAF ETEDSSRISW FMGTISSVQV 360 ADPVRWPNSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKLRLLQ 420 HPEFPLDNQF PTPTFSGNPL GSSSPLCCLS DNTPAGIQGA RHAQFGISLS DLHFNKLQTG 480 LFPPTSFQRL EHSAPPSRIS SGLIISTPNI QDNVSCLLTI GNSSQVAKKL DDGKTPQLML 540 FGKPILTEQQ ISLSCSGDTV SPVRTGNSSS DGNQDKVTNF SSDGLPENPS CEGFPWYKDR 600 LTSEPSLETG HCKVFMESED VGRTLDLSVL GSYEELYRRL TNMFGIERSE MLSHVLYRDA 660 AGAVKHTGDE PFSEFMKTAR RLMILTDSGS DNIGRQILPV CIGI

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MIMFGDSSKE LMKETEKCLD SQLWHACAGG MVQMPPVNSK VYYFPQGQAE HANGNVDFGN  60
CPRIPALILC RVAAVKFLAD PETDEVYAKI QLVPVRSGEA DYLEDDGGLS GNGAEVADKP  120
ASFAKTLTQS DANNGGGFSV PRYCAETIFP RLDYSADPPV QTILAKDVHG EIWKFRHIYR  180
GTPRRHLLTT GWSTFVNQKK LIAGDSIVFL RTENGDLCVG IRRAKRGVGG GPESPSGWNS  240
SAGNCVSPFG GFSVFLKEDE RLMRNANGGM SNSSGGGLRG RGRVKPDSVI EAAALAANGQ  300
PFEVVYYPRA STPEFCVKAA AVRAAMRIQW CSGMRFKMAF ETEDSSRISW FMGTISSVQV  360
ADPVRWPNSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKLRLLQ  420
HPEFPLDNQF PTPTFSGNPL GSSSPLCCLS DNTPAGIQGA RHAQFGISLS DLHFNKLQTG  480
LFPPTSFQRL EHSAPPSRIS SGLIISTPNI QDNVSCLLTI GNSSQVAKKL DDGKTPQLML  540
FGKPILTEQQ ISLSCSGDTV SPVRTGNSSS DGNQDKVTNF SSDGLPENPS CEGFPWYKDR  600
LTSEPSLETG HCKVFMESED VGRTLDLSVL GSYEELYRRL TNMFGIERSE MLSHVLYRDA  660
AGAVKHTGDE PFSEFMKTAR RLMILTDSGS DNIGRQILPV CIGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein