PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR83744.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 447aa MW: 50208.4 Da PI: 7.3192 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.7 | 1.1e-09 | 80 | 106 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++rtG C++ +CkF+H++ RWR83744.1 80 PGEPDCVFYLRTGSCRFATNCKFNHPR 106 5789*********************96 PP | |||||||
2 | zf-CCCH | 27.9 | 3.9e-09 | 152 | 176 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C+++++ G Ck+G C+++H++ RWR83744.1 152 QQECKYYLKAGGCKFGKACRYNHSR 176 679********************95 PP | |||||||
3 | zf-CCCH | 33.3 | 8e-11 | 196 | 221 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+f++rtG Ck+ +C+F+H+ RWR83744.1 196 PGERECPFYMRTGSCKFAINCRFHHP 221 5789*********************9 PP | |||||||
4 | zf-CCCH | 24.3 | 5.4e-08 | 344 | 369 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f+++G+Ck+ + C+++H++ RWR83744.1 344 GQSECQYFMKFGYCKFKSACRYHHPK 369 7899********************96 PP | |||||||
5 | zf-CCCH | 22.7 | 1.7e-07 | 391 | 414 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C +++r+G+Ck+G+ Ck H+ RWR83744.1 391 QTTCVHYSRYGICKFGPACKHDHP 414 668*****************9997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence |
MEEPQQGNSP KTDEKQELGF SSPSPSPPPP PPPPVDVSDI EKLDLDLQNL WLKEDDWNPR 60 EQVSVPKDEK KRRFSYPIRP GEPDCVFYLR TGSCRFATNC KFNHPRRRKN QVGKDKAKEK 120 EKDEKEKEKE KKEVEVEHEN EEEEEVHEKE GQQECKYYLK AGGCKFGKAC RYNHSREQAG 180 AGEPADLNFL GLPIRPGERE CPFYMRTGSC KFAINCRFHH PDPTAVGGSD PIPVYQNGTS 240 LQVHASAESS PLPAAWALQS TSNEPVPYME ASPQPYPPAM LQPLHGVHPN PEWNTYMGLT 300 SPIFPSERHI QALSASGMND QTKQADSSTR QLHTKVEEFP KKPGQSECQY FMKFGYCKFK 360 SACRYHHPKK RVSKSTACVL SPMGLPLRPD QTTCVHYSRY GICKFGPACK HDHPINSGPL 420 ATPVTPASDR APSLDKSTSE EAGVLTC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 105 | 109 | PRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 2e-92 | C3H family protein |