PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83463.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 575aa MW: 62860 Da PI: 7.2214

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.1	3e-15	166	261	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a+ e+ +l+rg+l++ +W ev++ + ++ +++s +qCk+k++nl+kryk + +++ ++ s s+s++ +f+++e RWR83463.1 166 EWSDSAIGCLLDAYMEKFMQLNRGNLRGRDWVEVAATVseradhqksccDKQRVSKSVEQCKNKMDNLKKRYKVELQRMTNG-SVSVSHWTWFKKME 261 5**********************************************9**************************99.67778******7 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MASCDDDFSL LGDDSHHHHH HHHHHHTPNS FAASHHPRFA PKPSPSPLHH IPNKKPVGPA 60 DHDDDYGDPS AFCSHPSDPK FVNPCFDGDP DPDDAAAAAA IAAAGGNPFG HPEDDGDPDR 120 KGGKRKDRCG GGDDLSDDGM ATPFKKSKTM IGSGSGGGDY RKDREEWSDS AIGCLLDAYM 180 EKFMQLNRGN LRGRDWVEVA ATVSERADHQ KSCCDKQRVS KSVEQCKNKM DNLKKRYKVE 240 LQRMTNGSVS VSHWTWFKKM ELIVGSSAAK ASVSDEDKSV SGPVSIMQRQ TKRYAVATPS 300 PVGIANNMKT KSLSNPPRWR RVVFKISGAA LAGNDPQNVD PKVTMLIARE VAMANRLGVE 360 VAIVVGGRNF FCADTWLGTT SLDRAMAYQI GMMATVMNSI LLQASLEKLG VQTRVQTSFT 420 MHEIAEPYMK RKAIKHLEKG RVVIFGGVGA GLGNQLFITD TAAALRALEI NADVVLKGTN 480 VDGVYDCQSR NGNNVTFEHI SFRDCATRGF SAMDMTAMSM CEENGIPVVI FNLLEPGNIS 540 RALCGDQAAR AKVEKKEMIE QYPDLDKDLD RLQVL

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MASCDDDFSL LGDDSHHHHH HHHHHHTPNS FAASHHPRFA PKPSPSPLHH IPNKKPVGPA  60
DHDDDYGDPS AFCSHPSDPK FVNPCFDGDP DPDDAAAAAA IAAAGGNPFG HPEDDGDPDR  120
KGGKRKDRCG GGDDLSDDGM ATPFKKSKTM IGSGSGGGDY RKDREEWSDS AIGCLLDAYM  180
EKFMQLNRGN LRGRDWVEVA ATVSERADHQ KSCCDKQRVS KSVEQCKNKM DNLKKRYKVE  240
LQRMTNGSVS VSHWTWFKKM ELIVGSSAAK ASVSDEDKSV SGPVSIMQRQ TKRYAVATPS  300
PVGIANNMKT KSLSNPPRWR RVVFKISGAA LAGNDPQNVD PKVTMLIARE VAMANRLGVE  360
VAIVVGGRNF FCADTWLGTT SLDRAMAYQI GMMATVMNSI LLQASLEKLG VQTRVQTSFT  420
MHEIAEPYMK RKAIKHLEKG RVVIFGGVGA GLGNQLFITD TAAALRALEI NADVVLKGTN  480
VDGVYDCQSR NGNNVTFEHI SFRDCATRGF SAMDMTAMSM CEENGIPVVI FNLLEPGNIS  540
RALCGDQAAR AKVEKKEMIE QYPDLDKDLD RLQVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein