PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83350.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 390aa MW: 43405.2 Da PI: 6.7753

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.1	2.8e-06	12	54	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +r+C+ +++ + +C+ ++ +lC C + +H H++ RWR83350.1 12 ARTCDSCQSAACRVYCRADSAYLCVGCDSCIHAAnwvasrHER 54 689****99*******************65677777775 PP
2	zf-B_box	26.3	1.6e-08	55	100	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC+ C +H+ H +vp+ RWR83350.1 55 VWVCEACESAAATITCKADAAALCAACDADIHSAnplarrHHRVPI 100 689*****************************66899999877775 PP
3	CCT	71.7	1.8e-24	321	364	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkF+K+irY+sRKa+Ae+RpR+KGrF+k++ RWR83350.1 321 REASVLRYREKKKTRKFQKTIRYASRKAYAETRPRIKGRFAKRT 364 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MKRNSGDGGG RARTCDSCQS AACRVYCRAD SAYLCVGCDS CIHAANWVAS RHERVWVCEA 60 CESAAATITC KADAAALCAA CDADIHSANP LARRHHRVPI LPIPGHLFGM SQPVIRPVYH 120 GDDVSGDGFA GEEEVGPQVE DEAASWLLLN PGKSKEVDDY LDLVEYNSCG ENNNNNNPYQ 180 DHHQYSHQQK QNNGKNDRSD RVVPVQCGGN EHLQQLQQQQ LLQQQKDMEY DGSKSGFSYT 240 GSPSHSESGN AALLFFFKSM EHDGNFYGYQ QVSLSPMEAS IVPDSTRTDI SKSHTRPPRG 300 TIELFSGPPL QMPHQFTPLD REASVLRYRE KKKTRKFQKT IRYASRKAYA ETRPRIKGRF 360 AKRTDVEFEV DQMFNATDMA ESGYGIVPSL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MKRNSGDGGG RARTCDSCQS AACRVYCRAD SAYLCVGCDS CIHAANWVAS RHERVWVCEA  60
CESAAATITC KADAAALCAA CDADIHSANP LARRHHRVPI LPIPGHLFGM SQPVIRPVYH  120
GDDVSGDGFA GEEEVGPQVE DEAASWLLLN PGKSKEVDDY LDLVEYNSCG ENNNNNNPYQ  180
DHHQYSHQQK QNNGKNDRSD RVVPVQCGGN EHLQQLQQQQ LLQQQKDMEY DGSKSGFSYT  240
GSPSHSESGN AALLFFFKSM EHDGNFYGYQ QVSLSPMEAS IVPDSTRTDI SKSHTRPPRG  300
TIELFSGPPL QMPHQFTPLD REASVLRYRE KKKTRKFQKT IRYASRKAYA ETRPRIKGRF  360
AKRTDVEFEV DQMFNATDMA ESGYGIVPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	3e-90	CO-like family protein