PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR83345.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 303aa    MW: 34636.6 Da    PI: 6.9307
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR83345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.78.5e-151053245
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 ie +  r+ tf kRr+g+ KK +E  +LC+++v++i ++++g+
  RWR83345.1 10 LIECQKSRNATFVKRRKGLRKKTFEFATLCGVDVCLICLGPQGE 53
                5888999***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MGRAKVPLKL IECQKSRNAT FVKRRKGLRK KTFEFATLCG VDVCLICLGP QGERQHETEI  60
WPHDLPEVRR IIKRYKSLSK EEQVRRKLDL SSLLEQRNKK LEEELKHRSG EKENVMYPSW  120
DDRLNEFPLE MLQDLLATLD SKMETVNRKA ELMTNNSSSQ GKEVSVEMPP QAYLNQGMLD  180
NYKMLDDDNR MAIQPVPISY VRPLDQGHMP VELPYIPEIP CYSYSNFNTN SNNMLPPPIM  240
GYYVNPGMGT LGTNMYHNHK ELSVAGCSEC FMQLQSSSVM GSPSSNSNSS LMHLHSSDLA  300
ESD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.12e-20M-type_MADS family protein