PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83277.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

NAC

Protein Properties

Length: 467aa MW: 52432.6 Da PI: 4.9946

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.5	1.7e-33	100	239	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWka 85 lp+G++F+Ptd+el+++ L+k g+ ++ e+i++vd i++++P++Lp vk++ + +fF+++ k+y+tg+rk+r+++ + +W++ RWR83277.1 100 LPRGVKFDPTDQELLWHLLAKVGVGNAkphpfID--EFIPTVDeedgICYAHPQNLP-GVKQDGTISHFFHRTIKAYNTGTRKRRKIHgddsgDVRWHK 195 799**********8888777555445654422..33555544446******.677788889**************85555544778* PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tgk+k+v+ +g ++g+kk++v+y +r +k+ekt+Wvmh+y+l RWR83277.1 196 TGKTKPVIM-DGVHKGCKKIMVLYmsMARGEKPEKTNWVMHQYHL 239 *******.999*******6645888888*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MEPLLLIDDE DSFVVDDEDG AALADRRRRF ICCLHADTES PAMAGPSWLV DSRRIATKIK 60 CASETCDPKK VQWKSNPTRA CPNCDHVIDN SDVSQEWPGL PRGVKFDPTD QELLWHLLAK 120 VGVGNAKPHP FIDEFIPTVD EEDGICYAHP QNLPGVKQDG TISHFFHRTI KAYNTGTRKR 180 RKIHGDDSGD VRWHKTGKTK PVIMDGVHKG CKKIMVLYMS MARGEKPEKT NWVMHQYHLG 240 TGEDEKDGEH VVSKVFYQQQ VKPNDKNEQE PPFVAMKESV TTKVDPLTPK SVTPEPPRSE 300 KRHMDHGLTL EPVHAYEESS AQVLVPVLHE TSAGENCTRA ESEWEGKDDL ENHAIELKWS 360 QGDSQYLLDS QQLVEGLSLC DDLLLSQSSS GGGIGEPRRD IPLLSDYARL GPEDLKKDLE 420 ECQRLSHFDH TDIELDTPPD FRLSQLEFGS QESFLAWAGK VGDANDG

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MEPLLLIDDE DSFVVDDEDG AALADRRRRF ICCLHADTES PAMAGPSWLV DSRRIATKIK  60
CASETCDPKK VQWKSNPTRA CPNCDHVIDN SDVSQEWPGL PRGVKFDPTD QELLWHLLAK  120
VGVGNAKPHP FIDEFIPTVD EEDGICYAHP QNLPGVKQDG TISHFFHRTI KAYNTGTRKR  180
RKIHGDDSGD VRWHKTGKTK PVIMDGVHKG CKKIMVLYMS MARGEKPEKT NWVMHQYHLG  240
TGEDEKDGEH VVSKVFYQQQ VKPNDKNEQE PPFVAMKESV TTKVDPLTPK SVTPEPPRSE  300
KRHMDHGLTL EPVHAYEESS AQVLVPVLHE TSAGENCTRA ESEWEGKDDL ENHAIELKWS  360
QGDSQYLLDS QQLVEGLSLC DDLLLSQSSS GGGIGEPRRD IPLLSDYARL GPEDLKKDLE  420
ECQRLSHFDH TDIELDTPPD FRLSQLEFGS QESFLAWAGK VGDANDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	30	DRRRRF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-155	NAC family protein