PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83231.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 560aa MW: 62068.4 Da PI: 8.5819

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.7	2.2e-40	167	243	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gC++dls+ k+yh++hkvCe+h k++ v+v+g+eqrfCqqCsrfh l efD+ krsCr+rLa+hnerrrk+q RWR83231.1 167 CQVHGCNMDLSSSKDYHKKHKVCEIHCKTARVIVNGIEQRFCQQCSRFHLLAEFDDVKRSCRKRLAGHNERRRKPQL 243 **************************************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MLVIVLMESW NYGPEGRGVV LSDEMVSSSF DALARRRKLY PSWDLKIPCN HENSLPLTVG 60 VAFGNHGFKE LRGEMGSGRV VSHLVNPKML IGEEASSGLR ALSSVGEDKT RDSSLIDLKL 120 GRLVDYSDTK SGKSIKKLKV SSAVVSSSVA PVKRSRLANS NGQAPLCQVH GCNMDLSSSK 180 DYHKKHKVCE IHCKTARVIV NGIEQRFCQQ CSRFHLLAEF DDVKRSCRKR LAGHNERRRK 240 PQLENHSARI GSRFIGTSLP AGRSFIFPDI FPSGIVPEVI YEKGNWCRHV KMENEANTQP 300 LIPVVNGHSV QKPLHSAYDT NTVVSGVSYE NVHHYVQNVR DLHSIFQDAS SGSKEFSSFS 360 ISPTVEGLAK VLDSSCALSL LSTQSQNLPR NLSAIPIARP LTVQGGSTHY NVGQFPDKLM 420 AVSSKPSAII ASNRFSSPGM ERDHMEAVLV SDASNTVTFE AQVDSDFRTS GFVNSNDSFL 480 FHEHGNTVDL LQLSRQLDNA ELQRRSVRTS YISSDCSRMS IISLCCQQAP NHEKIKRRIF 540 QLFEDQTLTC KMDPCPEDVM

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MLVIVLMESW NYGPEGRGVV LSDEMVSSSF DALARRRKLY PSWDLKIPCN HENSLPLTVG  60
VAFGNHGFKE LRGEMGSGRV VSHLVNPKML IGEEASSGLR ALSSVGEDKT RDSSLIDLKL  120
GRLVDYSDTK SGKSIKKLKV SSAVVSSSVA PVKRSRLANS NGQAPLCQVH GCNMDLSSSK  180
DYHKKHKVCE IHCKTARVIV NGIEQRFCQQ CSRFHLLAEF DDVKRSCRKR LAGHNERRRK  240
PQLENHSARI GSRFIGTSLP AGRSFIFPDI FPSGIVPEVI YEKGNWCRHV KMENEANTQP  300
LIPVVNGHSV QKPLHSAYDT NTVVSGVSYE NVHHYVQNVR DLHSIFQDAS SGSKEFSSFS  360
ISPTVEGLAK VLDSSCALSL LSTQSQNLPR NLSAIPIARP LTVQGGSTHY NVGQFPDKLM  420
AVSSKPSAII ASNRFSSPGM ERDHMEAVLV SDASNTVTFE AQVDSDFRTS GFVNSNDSFL  480
FHEHGNTVDL LQLSRQLDNA ELQRRSVRTS YISSDCSRMS IISLCCQQAP NHEKIKRRIF  540
QLFEDQTLTC KMDPCPEDVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-44	SBP family protein