PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR83079.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 338aa    MW: 37307.3 Da    PI: 8.2291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR83079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.59.5e-1381105126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C  f++ GtC+yG++C+FaHg
  RWR83079.1  81 FKTRICEKFLQ-GTCPYGSNCNFAHG 105
                 69*********.*************9 PP
2zf-CCCH19.22.2e-06148169425
                 ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                 ++Cr f+ +  C+yGd+C+F H
  RWR83079.1 148 RICRKFYYGEGCPYGDKCTFLH 169
                 6899999966************ PP
3zf-CCCH391.3e-12238263126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  RWR83079.1 238 WKTKICNKWEMTGHCPFGEKCHFAHG 263
                 8************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MIVPAPPSSF FPPPPWSQTP LDGRQQLDSS HPDFPPAKKQ RISEIERSIP LQNTPLNPRL  60
PPPSNNNNNP PVMKGISRMF FKTRICEKFL QGTCPYGSNC NFAHGVDDIR KPPPNWKEIV  120
AAHGGGGDDR DRGLGNLVEH QKVINRLRIC RKFYYGEGCP YGDKCTFLHE DPEKVRESAV  180
GMVSSNGNWL DHSDSDVVMN HHVQESRSSD GIVISVTDNK QSSVVVVNSA CDGKPVYWKT  240
KICNKWEMTG HCPFGEKCHF AHGHGDLQKF AGGHMEVDSG NVGVAPPKPL PVSTSFISPV  300
KTGATCKHPS RAMRLAKLNG PGMISHVYAD WIDNLELS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-56C3H family protein