PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR83025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 107aa MW: 12346.2 Da PI: 7.4519 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.9 | 8.9e-35 | 6 | 104 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC +++r+C ++C++apyfp+++p++f+ +++++Ga++v +l+++p + reda++++++eA+ar++dP+yG+vg+i+++q+++ ++ ++a+++ RWR83025.1 6 PCAACEFHGRRCHENCIFAPYFPSTDPERFESINRIYGARTVGTMLQQTPVHFREDAVETMLFEARARIEDPIYGSVGIISRMQHEIVVARYKMAVMQL 104 7**************************************************************************************999988887765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence |
MSYRSPCAAC EFHGRRCHEN CIFAPYFPST DPERFESINR IYGARTVGTM LQQTPVHFRE 60 DAVETMLFEA RARIEDPIYG SVGIISRMQH EIVVARYKMA VMQLQIA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 7e-37 | LBD family protein |