PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR83006.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 526aa MW: 58285.6 Da PI: 7.1356

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR83006.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.8	4.9e-17	143	192	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g RWR83006.1 143 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHLAARAYDRAAIKFRG 192 78*****************......55**********************997 PP
2	AP2	39.7	1.2e-12	235	285	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g RWR83006.1 235 SKFRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDSETEAARAYDKAAIKHNG 285 79******.7**...5...334336******99********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MWDLNDSPNQ RREDPDVCFY EKNTSLDADD DMDKRVCLGS SSNDNSISSV VVLEASDEDD 60 RERKSSSCKI FGFSVNGDGE EDLGEAVVTR QFFPAENDGI PLPLPHWAGV KFCQSEPAAA 120 GKSAADLAQP IKKTRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHLAA 180 RAYDRAAIKF RGVGADINFT LDDYEDDLKQ MSSLTKEEFV HVLRRQSTGF PRGSSKFRGV 240 TLHKCGRWEA RMGQLLGKKY VYLGLFDSET EAARAYDKAA IKHNGRDAVT NFNPSMYENE 300 SNMSGNADHN LDLSLGSLAS KSNNFKSVDG ERLSWSNQRP QVAMELDLRM GGQPIKPRFD 360 EKLQLLSSNS PRQDPEWWGE TNNPQPFGHT TTLQQLNPSS YPVGRPIAPI WPSAVTFSHQ 420 NLQTQFHNSN QVPQSTGNIG SVQLLAGDDP ARNGGGGGLP LTTGEQISTQ QRQLNWGRSS 480 SNWAASAAPT PQLFVTSAAS SGFPSHIMKQ PSWLQQKGLH SLMRPT

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MWDLNDSPNQ RREDPDVCFY EKNTSLDADD DMDKRVCLGS SSNDNSISSV VVLEASDEDD  60
RERKSSSCKI FGFSVNGDGE EDLGEAVVTR QFFPAENDGI PLPLPHWAGV KFCQSEPAAA  120
GKSAADLAQP IKKTRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHLAA  180
RAYDRAAIKF RGVGADINFT LDDYEDDLKQ MSSLTKEEFV HVLRRQSTGF PRGSSKFRGV  240
TLHKCGRWEA RMGQLLGKKY VYLGLFDSET EAARAYDKAA IKHNGRDAVT NFNPSMYENE  300
SNMSGNADHN LDLSLGSLAS KSNNFKSVDG ERLSWSNQRP QVAMELDLRM GGQPIKPRFD  360
EKLQLLSSNS PRQDPEWWGE TNNPQPFGHT TTLQQLNPSS YPVGRPIAPI WPSAVTFSHQ  420
NLQTQFHNSN QVPQSTGNIG SVQLLAGDDP ARNGGGGGLP LTTGEQISTQ QRQLNWGRSS  480
SNWAASAAPT PQLFVTSAAS SGFPSHIMKQ PSWLQQKGLH SLMRPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-109	AP2 family protein