PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82944.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 466aa    MW: 51868 Da    PI: 5.6487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.93.8e-93574632373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPilkfsh 95 
                 ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r ar  ++ +k l++ ++++ +    ++++++  l  f +++P+++f++
  RWR82944.1  57 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIIRAAR--TGSCKMLTAMANANADisiPTHRFSVIDLasFIDLTPWHRFGF 153
                 79****************************************************..5555555555544444334556666666688************ PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vak 184
                  +aN aI +aveg + +Hi+D+++++++Q p+L+++La+Rpegpp +R+T+ + p++       ++ee+g+rL +fA++ ++ +ef+v+        a 
  RWR82944.1 154 SAANAAIIDAVEGFSIIHIVDLSVTHCMQIPTLIDSLANRPEGPPFIRLTVASTPTNLppsLDLSYEELGSRLVNFARSRNIGMEFRVIpsnpsdgFAF 252
                 *******************************************************99998778899**********************97765555444 PP

        GRAS 185 rledleleeLrvkp...gEalaVnlvlqlhrll.....................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                  +e++++++L +     gEal++n+++ lh+++                     ++s s++s r+ +Lk +++l P+vv+vv+++ad +s++++ r+ +
  RWR82944.1 253 LIEQVRTQRLVFADsseGEALVINCQMTLHYIPeetigavsnmnptpffynsppSSSSSSSSFRSLFLKELRRLDPTVVIVVDEDADFTSNNLVCRLRS 351
                 56677777775554677***********************************9988888888999********************************** PP

        GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                 a+++ +  +d++++ lpr s++r+++E+  + ++i+nv+aceg +r+er e +++W +r++ a F+++p++e+a++++k++l +++  g+  ++e++ l
  RWR82944.1 352 AFNFLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIACEGMQRIERLEPKSRWVQRMRGANFRSAPFGEEAVAEVKTMLDEHA-AGWGFKKEDEDL 448
                 *****************************.********************************************************.77778899999* PP

        GRAS 359 vlgWkdrpLvsvSaW 373
                 vl+Wk++++v+++aW
  RWR82944.1 449 VLTWKGHNVVFATAW 463
                 *************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MMQFTETPPP PPPLHQNGSG QCSNQAMTKN TSYRSRPWPG FPTSKALGSF GDANCMEQLL  60
VHCANAIESN DATLAQQILW VLNNIAPPDG DSNQRLTCGF LRALIIRAAR TGSCKMLTAM  120
ANANADISIP THRFSVIDLA SFIDLTPWHR FGFSAANAAI IDAVEGFSII HIVDLSVTHC  180
MQIPTLIDSL ANRPEGPPFI RLTVASTPTN LPPSLDLSYE ELGSRLVNFA RSRNIGMEFR  240
VIPSNPSDGF AFLIEQVRTQ RLVFADSSEG EALVINCQMT LHYIPEETIG AVSNMNPTPF  300
FYNSPPSSSS SSSSFRSLFL KELRRLDPTV VIVVDEDADF TSNNLVCRLR SAFNFLWIPY  360
DTVDTFLPRG SKQRQWYEAD ICWKIENVIA CEGMQRIERL EPKSRWVQRM RGANFRSAPF  420
GEEAVAEVKT MLDEHAAGWG FKKEDEDLVL TWKGHNVVFA TAWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-174GRAS family protein