PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82868.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 294aa MW: 31180.6 Da PI: 9.5838

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82868.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.9e-09	102	127	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ RWR82868.1 102 KTRMCNKYNTAEGCKFGDKCHFAHGE 127 9***********************96 PP
2	zf-CCCH	37.5	3.9e-12	264	287	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC +fa+ G C +GdrC+FaHg RWR82868.1 264 KTKLCENFAK-GSCTFGDRCHFAHG 287 9*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence
MDSFGPGNKR GRPAFNGYSG SKRSKQELES IPTATGSKSK PCTKFFSTAG CPFGEGCHFL 60 HYVPGGFTAV AQMTNFNNPA LPLASRNPGP PTSGGSTQPV TKTRMCNKYN TAEGCKFGDK 120 CHFAHGEWEL GRPIIPSHEE HPPVPMMGRL AGRLEPPPPG LAAAASFGAS ATAKISVDAS 180 LAGAIIGKGG MNSKRICHIT GAKLSIREHE ADPNLRNIEL EGTFDQIKHA SAMVREFIVD 240 IGTAMAPMKN PPVAASMGPG KNLKTKLCEN FAKGSCTFGD RCHFAHGASE LRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	7e-52	C3H family protein