PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82857.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

SBP

Protein Properties

Length: 395aa MW: 42763.6 Da PI: 9.541

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133	9.8e-42	93	168	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC++dl+ ak y+ +hkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ RWR82857.1 93 RCQVEGCKVDLTGAKPYYCKHKVCGMHSKSPKVTVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 168 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MECREREMEM GSSSLATSGA SASTDSLNGL KFGKKIYFED VGVGVPAKAG TFSGFSSSSS 60 SSSTSSSPAT APEAAKMVPR KGRGVVQGGQ PPRCQVEGCK VDLTGAKPYY CKHKVCGMHS 120 KSPKVTVNGL EQRFCQQCSR FHQLPEFDQG KRSCRRRLAG HNERRRKPPL MSFTSRNGRL 180 SSSFPEDISR VGGFPMDFTY IRSAGREVWP SVRVGEPVSG NQSPALGRFP LPLWKGHVEV 240 PPANVSTHRP EQYLQGSAGV NAFANLDIPS SEYFAGISNS SCALSLLSSQ PWGPRNRASG 300 SITANDFMNH EGSTVAPPSH SAMANNFMSG AWSFKGQETS SSSHGVPREL GLGETVSTEF 360 SGQLYSTRQG SKQYMDDHEQ HRQYGSSSNQ IHWSL

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MECREREMEM GSSSLATSGA SASTDSLNGL KFGKKIYFED VGVGVPAKAG TFSGFSSSSS  60
SSSTSSSPAT APEAAKMVPR KGRGVVQGGQ PPRCQVEGCK VDLTGAKPYY CKHKVCGMHS  120
KSPKVTVNGL EQRFCQQCSR FHQLPEFDQG KRSCRRRLAG HNERRRKPPL MSFTSRNGRL  180
SSSFPEDISR VGGFPMDFTY IRSAGREVWP SVRVGEPVSG NQSPALGRFP LPLWKGHVEV  240
PPANVSTHRP EQYLQGSAGV NAFANLDIPS SEYFAGISNS SCALSLLSSQ PWGPRNRASG  300
SITANDFMNH EGSTVAPPSH SAMANNFMSG AWSFKGQETS SSSHGVPREL GLGETVSTEF  360
SGQLYSTRQG SKQYMDDHEQ HRQYGSSSNQ IHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	9e-44	SBP family protein