PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82730.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HRT-like

Protein Properties

Length: 494aa MW: 55147.5 Da PI: 9.6059

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.5	1.9e-17	268	298	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGsvC++ P++gRKRC eHKG+Ri RWR82730.1 268 ICGVSLGDGSVCRNRPIEGRKRCGEHKGKRI 298 8*****************************7 PP
2	HRT-like	57.1	3e-18	334	364	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGsvC+ P++gRKRC eHKG+Ri RWR82730.1 334 ICGVPLSDGSVCTSRPIEGRKRCDEHKGKRI 364 8*****************************7 PP
3	HRT-like	55.6	8.5e-18	400	430	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGsvC+ P++gRKRC eHKG+Ri RWR82730.1 400 ICGVFLSDGSVCTSRPIEGRKRCGEHKGKRI 430 8*****************************7 PP
4	HRT-like	48.6	1.4e-15	462	491	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv l+dGsvC+ P++gR+RC +HKG+R RWR82730.1 462 ICGVPLRDGSVCRSRPIEGRQRCGQHKGQR 491 8****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence
MMEAGEIQRK KREECKRTKH DHLFSKWKVL IGSSDWENYS LGKDGVERYR LHNLPISCSC 60 PGLYELGIAK DDSHNDEGRK IREFHPNCVI VVYLGQAENV RTRLQHYGRV GSHLDHGNSI 120 ENASPCLQRR PGLFREVFSR GFPIVFRWVP MQNKKEAEKT EAQLLTYFDY AWNKGGNGAR 180 RQDDVLLKLD KIASGTLHSD LLAKLPHLHW SLFGGKHEGV RINATMPSKE TETASDLKHN 240 LAWRPFKFSK NRPHVVSVSG VGYEDHGICG VSLGDGSVCR NRPIEGRKRC GEHKGKRING 300 SISEYVISRE GITKEGKSGP CAQGKGIVDE DCNICGVPLS DGSVCTSRPI EGRKRCDEHK 360 GKRINGSIST YVISREGITR EGKAGPCAQG KGIVNEDYNI CGVFLSDGSV CTSRPIEGRK 420 RCGEHKGKRI NGSISTYVTS REGITKEGSA WRKGHVNEDY NICGVPLRDG SVCRSRPIEG 480 RQRCGQHKGQ RKTR

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence

MMEAGEIQRK KREECKRTKH DHLFSKWKVL IGSSDWENYS LGKDGVERYR LHNLPISCSC  60
PGLYELGIAK DDSHNDEGRK IREFHPNCVI VVYLGQAENV RTRLQHYGRV GSHLDHGNSI  120
ENASPCLQRR PGLFREVFSR GFPIVFRWVP MQNKKEAEKT EAQLLTYFDY AWNKGGNGAR  180
RQDDVLLKLD KIASGTLHSD LLAKLPHLHW SLFGGKHEGV RINATMPSKE TETASDLKHN  240
LAWRPFKFSK NRPHVVSVSG VGYEDHGICG VSLGDGSVCR NRPIEGRKRC GEHKGKRING  300
SISEYVISRE GITKEGKSGP CAQGKGIVDE DCNICGVPLS DGSVCTSRPI EGRKRCDEHK  360
GKRINGSIST YVISREGITR EGKAGPCAQG KGIVNEDYNI CGVFLSDGSV CTSRPIEGRK  420
RCGEHKGKRI NGSISTYVTS REGITKEGSA WRKGHVNEDY NICGVPLRDG SVCRSRPIEG  480
RQRCGQHKGQ RKTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-94	HRT-like family protein