PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82725.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 348aa    MW: 38704.5 Da    PI: 7.3667
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.17.2e-09115135526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  C++f++ G Ck+Gd+C +aHg
  RWR82725.1 115 ACPDFRK-GSCKRGDSCEYAHG 135
                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MMLGERHNPT VQIPPWTLID DPTAGMLYPH HPVPALHHYL HSNEMMLDDP EPDFPGLGSD  60
VAVDEYSSDE FRMYEFKIRR CARGRSHDWT ECPFAHPGEK AKRRDPRKFH YSGTACPDFR  120
KGSCKRGDSC EYAHGVFECW LHPARYRTQP CKDGTGCRRR VCFFAHTHDQ LRVLQQQQKS  180
PRGAVESYDG SPLRQAIYKS SSIVTSPTST LVSGPFSSSP SDSPPVSPDG LSTRRALLSD  240
AVDDVLAFSL GRLQINKGNS WGGSPRAGGG LDLGSVLRSL PSNTTEPMAT GKMGGMGLMH  300
VWEDETGMER VESGRNLRAN IFEKLRRESW VEMSAAAPDV GWVSDLVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-101C3H family protein