PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82600.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 347aa MW: 37601.1 Da PI: 6.4972

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82600.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17.8	7e-06	24	60	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 r C+ ++ fC+ ++ +lC C +++H g H RWR82600.1 24 RPCDSCSLSASMVFCRVDSAFLCLRCDSKIH-GastaH 60 68***8889******************.546667 PP
2	zf-B_box	26.6	1.2e-08	63	108	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ RWR82600.1 63 VWVCEVCEQAPAAVTCRADAAALCGTCDADIHSAnplarrHERVPI 108 689****************************6689999999997 PP
3	CCT	69.1	1.2e-23	275	319	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkF+K+irY+sRKa+Ae+RpR+KGrF+k+ae RWR82600.1 275 REARVLRYREKRKNRKFQKTIRYASRKAYAETRPRIKGRFAKRAE 319 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MTSSEVAVER ATKMLTATWR LSSRPCDSCS LSASMVFCRV DSAFLCLRCD SKIHGASTAH 60 ARVWVCEVCE QAPAAVTCRA DAAALCGTCD ADIHSANPLA RRHERVPIVP FHETPSTVRS 120 VNPLFDDPIS AGGHPCGEEE EAEAASWLLL DPNPKVSEAA DVGSKEFCFS DLDYPCLNDN 180 VVPVQTKGFQ VQQGFVPSSA ENCVVELDFR RSKATTTTYS AYATAPSLTQ SFSSSSLDIG 240 VVPDGNSSAT TDESKPFDSI SSYKAGSVTV SGLDREARVL RYREKRKNRK FQKTIRYASR 300 KAYAETRPRI KGRFAKRAEN DGDFDQIYSP SAAALVSDGG YGVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MTSSEVAVER ATKMLTATWR LSSRPCDSCS LSASMVFCRV DSAFLCLRCD SKIHGASTAH  60
ARVWVCEVCE QAPAAVTCRA DAAALCGTCD ADIHSANPLA RRHERVPIVP FHETPSTVRS  120
VNPLFDDPIS AGGHPCGEEE EAEAASWLLL DPNPKVSEAA DVGSKEFCFS DLDYPCLNDN  180
VVPVQTKGFQ VQQGFVPSSA ENCVVELDFR RSKATTTTYS AYATAPSLTQ SFSSSSLDIG  240
VVPDGNSSAT TDESKPFDSI SSYKAGSVTV SGLDREARVL RYREKRKNRK FQKTIRYASR  300
KAYAETRPRI KGRFAKRAEN DGDFDQIYSP SAAALVSDGG YGVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	9e-83	CO-like family protein