PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR82525.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

CO-like

Protein Properties

Length: 409aa MW: 44595.6 Da PI: 5.2859

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR82525.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.8	3.5e-06	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ +C+++ lC +C + H+ H+++ RWR82525.1 4 LCDYCGDQRSVVYCRSDAASLCLSCDRNVHSAnalsqrHQRT 45 7*****************************657777778765 PP
2	zf-B_box	17.1	1.2e-05	47	73	5	31
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCll 31 C+++ +++++ C + + lC++C RWR82525.1 47 LCDRCYSQPAIVRCAEEKISLCQNCDW 73 7************************75 PP
3	CCT	67.1	4.8e-23	352	395	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ a++RYkeK+ktRkFeKkirY+sRKa+A+ R+RvKGrFvk+ RWR82525.1 352 RDSAVMRYKEKKKTRKFEKKIRYASRKARADVRKRVKGRFVKAG 395 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGSLCDYCGD QRSVVYCRSD AASLCLSCDR NVHSANALSQ RHQRTLLCDR CYSQPAIVRC 60 AEEKISLCQN CDWNGQGGST SASGHNRQPI NCYSGCPSVA ELSRIWSFVE DFPSTAELNC 120 KQGLGLMSIN EKCDSSCWGL PENSSTVDVA AMSSTHDLES VDKFDVWIGS SSMSPPNHVP 180 GNVDQSAGHV ESRLPKGLGI CEDDDLYEDF SVADVNLSFE ELFGMPHNQP VQPFEDTSID 240 GLFAVKSMPD SSGQGGFVAE DSSARQVEVM QAACSNAISA DSLMSNPGAK SDSNLYLPAR 300 QAHSSLSLSF SGLIGETSAG DYQDSGVSSM FLMGEPPWYP HGPESSLPSA SRDSAVMRYK 360 EKKKTRKFEK KIRYASRKAR ADVRKRVKGR FVKAGDKYDY DPLCQTRSF

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGSLCDYCGD QRSVVYCRSD AASLCLSCDR NVHSANALSQ RHQRTLLCDR CYSQPAIVRC  60
AEEKISLCQN CDWNGQGGST SASGHNRQPI NCYSGCPSVA ELSRIWSFVE DFPSTAELNC  120
KQGLGLMSIN EKCDSSCWGL PENSSTVDVA AMSSTHDLES VDKFDVWIGS SSMSPPNHVP  180
GNVDQSAGHV ESRLPKGLGI CEDDDLYEDF SVADVNLSFE ELFGMPHNQP VQPFEDTSID  240
GLFAVKSMPD SSGQGGFVAE DSSARQVEVM QAACSNAISA DSLMSNPGAK SDSNLYLPAR  300
QAHSSLSLSF SGLIGETSAG DYQDSGVSSM FLMGEPPWYP HGPESSLPSA SRDSAVMRYK  360
EKKKTRKFEK KIRYASRKAR ADVRKRVKGR FVKAGDKYDY DPLCQTRSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-86	CO-like family protein