PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR82235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26317.8 Da PI: 6.929 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 90.3 | 2.4e-28 | 4 | 106 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+ lr++C+++C+++p++ p++q++++ +++k++G++ +l+l++a pe+ r+++++sl+ eA+ r+ +P+yG+vg++++++++l+q+++e RWR82235.1 4 SCNGCRALRKGCSDNCTIRPCLqwihsPQSQANATIFLAKFYGRAGLLNLINAGPEHLRPAIFRSLLHEACGRIVNPIYGSVGLLSSGSWKLCQSAVED 102 6**********************************************************************************************9987 PP DUF260 95 allk 98 +l + RWR82235.1 103 VLNG 106 7665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MRMSCNGCRA LRKGCSDNCT IRPCLQWIHS PQSQANATIF LAKFYGRAGL LNLINAGPEH 60 LRPAIFRSLL HEACGRIVNP IYGSVGLLSS GSWKLCQSAV EDVLNGAPII QLGSDPAPAP 120 SPSPQIKAGD IRHVSKQEPH RVKTRTRFKR VARKPKTILE LPAAELASEP VSNLKWTTSH 180 DSLLSHHDEL NAESDSAFSV ETVEDSLVDR AEPEPEPGSR ADENEQDQDL DLGLTLGFGR 240 I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-72 | LBD family protein |