PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR82127.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | NF-YA | ||||||||
Protein Properties | Length: 311aa MW: 33495.4 Da PI: 10.01 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 100.3 | 1.8e-31 | 146 | 200 | 3 | 58 |
CBFB_NFYA 3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 + YVNaKQy++Il+RR++Rak+e ++kl +ksrkpylheSRh hA+rRpRg+gGrF RWR82127.1 146 TTYVNAKQYHGILRRRKSRAKAEMKNKL-IKSRKPYLHESRHLHAMRRPRGCGGRF 200 78**************************.**************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence |
MQAMCFKGHG GLLQHASVQS STVQIAPWWS VFGSPRIFGE LCGQLKPSSD DQPNGEDKTT 60 ATQVKYATHH GTIMAFQEKG SSDTSKFSLV SGQSEDSRKE NKAQQLSTTI SLQPSPPEHQ 120 AHFGLGFGQH MHGQVLLPLN VAEDGTTYVN AKQYHGILRR RKSRAKAEMK NKLIKSRKPY 180 LHESRHLHAM RRPRGCGGRF LNTKNGNIGK GGSTVDKESG KGAQAASSSS SEILQSDSGN 240 SNSGKVTCGG PSLSGSEVTS IYPQADTDCF RTENLRSSGF HHFTNMTPVG LSSGSTIKWA 300 TSDGCSNLLR G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 2e-34 | NF-YA family protein |