PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR82040.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 453aa    MW: 51430.4 Da    PI: 6.1175
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR82040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3273.6e-100744501373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lLl  A+av+++++ la + L++l +++s +gd++qR+a yf+ +Laarl+   s  y+ +  ++t+     ee+ a+  ++ +sP+++f+h+taN
  RWR82040.1  74 LIHLLLVSATAVDENKTILAAENLSELYKNVSLNGDSIQRVAGYFADGLAARLLTRRSPFYDMIMNRPTA----NEEFLAFMGLYRASPFFQFAHFTAN 168
                 689************************************************************9999997....677888889**************** PP

        GRAS 100 qaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAee.lgvpfefnvlvakrledle 190
                 qaI ea+e+e     +++H+iDfd+ +G+QWp+L+q+L++++  ++p sl iTg+g+    s eeleet+ rL +fA++ ++++fef+ +    +   +
  RWR82040.1 169 QAIIEAFEEEeqhnnRELHVIDFDVLYGFQWPSLIQSLSDKAssSNPISLHITGFGR----SLEELEETKTRLVNFAKScCNLDFEFEGF----VRGSN 259
                 ********9977777789*********************999745566*********....9***************99459*******7....56678 PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                 + +L+vk++E++aVnl l+l +l  +++++++    +Lk + sl+P +vv+veq+ ++++ sFl rf+e+l+y++a+fdsl+  lp+es er ++E+  
  RWR82040.1 260 PINLSVKKKETVAVNLLLHLNTLG-SDLQISE----TLKSIYSLNPSIVVLVEQDGSRSARSFLSRFMESLHYFAAMFDSLDDCLPPESAERLSIEKSH 353
                 88*******************997.5565555....*************************************************************** PP

        GRAS 290 lgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sd.....g....yrveeesg..slvlgWkdrpLvsvSaW 373
                 +g+ei++++ ce+ e   +r e+le+Wr r+e++GF+ v+ls++  +qaklll+  + +      g    ++v e++g  +l lgW+dr L++++aW
  RWR82040.1 354 FGKEIKSMINCEKGEeYHQRYERLETWRGRMESVGFRGVKLSSRSLSQAKLLLKIRShFSqmefdGggggFKVFERDGgrALSLGWQDRYLITATAW 450
                 ***********97664899**********************************854433211111234447777775511455************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    
MEMQETEEEF LNLRLATAVD TGGGRKRKKK DEINPYTQLG EEEEKLITFL QLRDRMLKLD  60
PKRGGVENGK GLHLIHLLLV SATAVDENKT ILAAENLSEL YKNVSLNGDS IQRVAGYFAD  120
GLAARLLTRR SPFYDMIMNR PTANEEFLAF MGLYRASPFF QFAHFTANQA IIEAFEEEEQ  180
HNNRELHVID FDVLYGFQWP SLIQSLSDKA SSSNPISLHI TGFGRSLEEL EETKTRLVNF  240
AKSCCNLDFE FEGFVRGSNP INLSVKKKET VAVNLLLHLN TLGSDLQISE TLKSIYSLNP  300
SIVVLVEQDG SRSARSFLSR FMESLHYFAA MFDSLDDCLP PESAERLSIE KSHFGKEIKS  360
MINCEKGEEY HQRYERLETW RGRMESVGFR GVKLSSRSLS QAKLLLKIRS HFSQMEFDGG  420
GGGFKVFERD GGRALSLGWQ DRYLITATAW HCA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12529RKRKK
22531RKRKKKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.19e-57GRAS family protein