PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR81919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | LBD | ||||||||
Protein Properties | Length: 170aa MW: 18572.2 Da PI: 8.6148 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 146.2 | 9e-46 | 13 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++ RWR81919.1 13 PCAACKLLRRRCAQGCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPMHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQA 111 7**********************************************************************************************9997 PP DUF260 100 e 100 e RWR81919.1 112 E 112 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence |
MRDMSRKQGA SSPCAACKLL RRRCAQGCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQE 60 LPMHQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQVD VLQTQLALAQ AEVVHMRMRQ 120 ATSFSGLAGN SVESGSPSSK LTTPHSHSRS LFAMDMVVDQ TNMGESLWSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-71 | LBD family protein |