PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR81823.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family ARF
Protein Properties Length: 908aa    MW: 100977 Da    PI: 6.6758
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR81823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.3e-23127228199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+
  RWR81823.1 127 FSKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLL 222
                 88*****************************9777666.49************************************************..8899999* PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++++r+
  RWR81823.1 223 LGIRRA 228
                 ***997 PP
2Auxin_resp122.72.7e-40253336183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m+fete+ss rr++Gt++gvsdldpvrWpnS+Wrs+k
  RWR81823.1 253 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMQFETEESSVRRYMGTITGVSDLDPVRWPNSHWRSVK 336
                 79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    
MKLSSCGFVQ HTQEGEKRCL NSELWHACAG PLVSLPAIGS HVVYFPQGHS EQVAASTNKE  60
VDTHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTQQEQKDA YFPAELGNLG  120
KQPTNYFSKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSL QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTFMPSSVL  240
SSDSMHIGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVSVGMRFRM  300
QFETEESSVR RYMGTITGVS DLDPVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPTSFP LRLKRPWPPG LPSLYGGKDD DLGPNSPVMW LRDGGNQGIQ SLSFQGHGVT  420
PWMQPRFDVA SLGLHPDVYQ GVAAAALKEM RGVDPLKQAS SSLLQFQQPS IPNGSTYLSP  480
SQILQQSQAQ LPQSFLHTIQ ENQPTAQSHS HLLQRHLQLH RPINDQQQIL QHQQQHQQQP  540
PHHYSDQQQL VQTMSTFSQL GSASQPQKPS LQAISSTPQP PNLPETNGNP VITSTLSPLH  600
SILGSCSQDE ASSLHFPKNS PLVPSATWLP RRVAFESMLH SGTQCVTPQV DQLDLGPLQP  660
TVPQHSTVPQ HSISLPPFPG RECPVDQEGS TDPQNNLLFG VNIDSPSLLI QNNMSNLIGV  720
GDKSDELDMP LAASNIMRST GDDYLLNTEI TTSSCLDESG LLQLPDNGCH TNPPNRTFVK  780
VYKSGSFGRS LDITRFSSYN ELRGELARMF GLGGQLEDPL RSGWQLVFVD RENDVLLLGD  840
DPWQEFLNSV WCIKILSPQE MHQMGKHDSE LLNSVPIQRL SNNSCDDYVS RHGSRNFSTG  900
IASEGTKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein