PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR81762.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C3H

Protein Properties

Length: 1544aa MW: 165075 Da PI: 5.8286

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR81762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3.1e-07	1522	1544	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+ f+++G+Ck G++C+F H+ RWR81762.1 1522 QRVCK-FHESGHCKKGSSCNFLHP 1544 789.***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1544 aa Download sequence
MAIKHDDPQL GSPSVASASK EAEEAADPPP ETEGAESSRG GEKRKRSRPS TRVHFKTPAK 60 KHEEEDVCFI CFDGGNLVLC DRRGCTKAYH PICVNLDEAI YKGKTPWNCG WHTCSICEKA 120 SQYMCYTCTY SLCKGCIKEA GLLCVRGNKG FCETCMKTVM QIEKGVQADK EVAKVDFSDK 180 NSWEYLFKIY WLDLKGKLSL TLEELTKARN PSNGKAFDEG PSHEPCDATD DRGSSSDSSS 240 GLVEGSSSKG KKVKRSSSFT AKGGLRSAEK AGGEGKSVLE DVEWATKELL EFVAYMKDDD 300 TSALSQSDVK ALVLKYIKKN NLRDPRKKTQ IICDSRLGNL FGKERVGQLE MLKLLEPHFL 360 LKNKTMGGSS NADGIQMEME GDNDALTNMG SDKRRKSRKR VDERGRLQTN LDDFAAIDVH 420 NINLIYLRRK ALEDMLVDMD KFQEKVVGSF VRIRISGTAQ NQDLYRLVQV VGVGKSEVAY 480 KTGRTTEDVT LEILNLNSTE VVSIDTVSNQ EFTEEECKQL RQSIKCGHIS PLKVGEVQEK 540 ARAIQKVRVK DWIESEMSRL SNLRDRASEK GRRKEYPLLF ICIDKENMIE RRDLKRLLST 600 PEQRSRLLEE PPEVHDDPSM DPSYASDDDE GDQYDNRRRP TDAGFSRKGK EPISPGEGGL 660 ASNDDWKTDI NMSTKDDTAG AGESAKESSL NPGSSSWGAA TDLESGGWNS HLASGSGLSL 720 DATQEIVPVP IPSAPISDIS DTDKIWHYQD PSGKIQGPFS MAQLHKWNKI GYFPSTLRTW 780 KTSETQDDSI LLTDAINGMF PKEPSQWETH VNGFPDHGGT TLDDGKENNQ EGGWSGSTSS 840 AWKDKPKNNG DSESNWNNTS GPTNGNAEES KTDPWGTQAS AWTSRASEVA SSKEEWTGSS 900 SQAWDSSKSH NSGLTPPVNS DTLPLGQNAG NSWNTTRITG FESSNQDFGK PNISKAWETP 960 SSAVAPESTT DVWSVKEGSG NDSSNVPTAP EQGSGWTVGQ GAGNKWSAAS VQPTGSGWGA 1020 ISNSGSDGAQ QSPHVATDSD KIAPGWGTKV SKSEKCTVGG WDDLNRSPAS THNPTVTLDS 1080 GKNDLFIKPT PSPNPGSDGW AGMQVDENKL AGSPAISALA VSENCGIAPN PVSSWDKQST 1140 ASVSDIKKAA SMDERNSTLV KPSVEFWGSD ALAPSFTAID TTDILEPMAN LVGQSTKKGS 1200 NWSTPSASPA TVSSGWGNSV SNAVKDSSQN KLVTPSDNWK SGSPAKLSET GSAIKPSVSP 1260 NTGWGTGASA ENPDPILGTT PKKSNDGWGA SQVMGSGTAP EVNANASWGK ATQGNKNAGW 1320 GASPQGKTDM SWGKAAVQGN ADSGWGASQV KSANMGSGAA PEGNTNASWG KATQGSEDAG 1380 WGASPQGKTN MSWGKAAVQG NADSRWGAQE STKVGWGGPK GSADAGWGTA SQGNTNVGSG 1440 GPQASADLGW GTGSQGNTNS GWGASSGNSW GGQQKNTGER FSGDGDRGFH SSDSGQGRGK 1500 PSWNRSMSTG DGGSSRPPPR GQRVCKFHES GHCKKGSSCN FLHP

Sequence ? help Back to Top

Protein Sequence Length: 1544 aa Download sequence

MAIKHDDPQL GSPSVASASK EAEEAADPPP ETEGAESSRG GEKRKRSRPS TRVHFKTPAK  60
KHEEEDVCFI CFDGGNLVLC DRRGCTKAYH PICVNLDEAI YKGKTPWNCG WHTCSICEKA  120
SQYMCYTCTY SLCKGCIKEA GLLCVRGNKG FCETCMKTVM QIEKGVQADK EVAKVDFSDK  180
NSWEYLFKIY WLDLKGKLSL TLEELTKARN PSNGKAFDEG PSHEPCDATD DRGSSSDSSS  240
GLVEGSSSKG KKVKRSSSFT AKGGLRSAEK AGGEGKSVLE DVEWATKELL EFVAYMKDDD  300
TSALSQSDVK ALVLKYIKKN NLRDPRKKTQ IICDSRLGNL FGKERVGQLE MLKLLEPHFL  360
LKNKTMGGSS NADGIQMEME GDNDALTNMG SDKRRKSRKR VDERGRLQTN LDDFAAIDVH  420
NINLIYLRRK ALEDMLVDMD KFQEKVVGSF VRIRISGTAQ NQDLYRLVQV VGVGKSEVAY  480
KTGRTTEDVT LEILNLNSTE VVSIDTVSNQ EFTEEECKQL RQSIKCGHIS PLKVGEVQEK  540
ARAIQKVRVK DWIESEMSRL SNLRDRASEK GRRKEYPLLF ICIDKENMIE RRDLKRLLST  600
PEQRSRLLEE PPEVHDDPSM DPSYASDDDE GDQYDNRRRP TDAGFSRKGK EPISPGEGGL  660
ASNDDWKTDI NMSTKDDTAG AGESAKESSL NPGSSSWGAA TDLESGGWNS HLASGSGLSL  720
DATQEIVPVP IPSAPISDIS DTDKIWHYQD PSGKIQGPFS MAQLHKWNKI GYFPSTLRTW  780
KTSETQDDSI LLTDAINGMF PKEPSQWETH VNGFPDHGGT TLDDGKENNQ EGGWSGSTSS  840
AWKDKPKNNG DSESNWNNTS GPTNGNAEES KTDPWGTQAS AWTSRASEVA SSKEEWTGSS  900
SQAWDSSKSH NSGLTPPVNS DTLPLGQNAG NSWNTTRITG FESSNQDFGK PNISKAWETP  960
SSAVAPESTT DVWSVKEGSG NDSSNVPTAP EQGSGWTVGQ GAGNKWSAAS VQPTGSGWGA  1020
ISNSGSDGAQ QSPHVATDSD KIAPGWGTKV SKSEKCTVGG WDDLNRSPAS THNPTVTLDS  1080
GKNDLFIKPT PSPNPGSDGW AGMQVDENKL AGSPAISALA VSENCGIAPN PVSSWDKQST  1140
ASVSDIKKAA SMDERNSTLV KPSVEFWGSD ALAPSFTAID TTDILEPMAN LVGQSTKKGS  1200
NWSTPSASPA TVSSGWGNSV SNAVKDSSQN KLVTPSDNWK SGSPAKLSET GSAIKPSVSP  1260
NTGWGTGASA ENPDPILGTT PKKSNDGWGA SQVMGSGTAP EVNANASWGK ATQGNKNAGW  1320
GASPQGKTDM SWGKAAVQGN ADSGWGASQV KSANMGSGAA PEGNTNASWG KATQGSEDAG  1380
WGASPQGKTN MSWGKAAVQG NADSRWGAQE STKVGWGGPK GSADAGWGTA SQGNTNVGSG  1440
GPQASADLGW GTGSQGNTNS GWGASSGNSW GGQQKNTGER FSGDGDRGFH SSDSGQGRGK  1500
PSWNRSMSTG DGGSSRPPPR GQRVCKFHES GHCKKGSSCN FLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein